Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3837 and EX28DRAFT_3838 are separated by 4 nucleotides EX28DRAFT_3838 and EX28DRAFT_3839 are separated by 93 nucleotides EX28DRAFT_3839 and EX28DRAFT_3840 are separated by 289 nucleotides
EX28DRAFT_3837: EX28DRAFT_3837 - valine-pyruvate aminotransferase apoenzyme (EC 2.6.1.66), at 44,470 to 45,726
_3837
EX28DRAFT_3838: EX28DRAFT_3838 - Fe-S-cluster-containing hydrogenase components 2, at 45,731 to 46,186
_3838
EX28DRAFT_3839: EX28DRAFT_3839 - Helix-turn-helix domain, at 46,280 to 46,691
_3839
EX28DRAFT_3840: EX28DRAFT_3840 - Uncharacterized conserved protein, at 46,981 to 48,057
_3840
Position (kb) 46
47 Strain fitness (log2 ratio) -1
0
1
2 at 45.397 kb on + strand, within EX28DRAFT_3837 at 45.397 kb on + strand, within EX28DRAFT_3837 at 45.398 kb on - strand, within EX28DRAFT_3837 at 45.398 kb on - strand, within EX28DRAFT_3837 at 45.398 kb on - strand, within EX28DRAFT_3837 at 45.428 kb on + strand, within EX28DRAFT_3837 at 45.600 kb on + strand, within EX28DRAFT_3837 at 45.601 kb on - strand at 45.601 kb on - strand at 45.640 kb on + strand at 45.640 kb on + strand at 45.640 kb on + strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.842 kb on + strand, within EX28DRAFT_3838 at 45.842 kb on + strand, within EX28DRAFT_3838 at 45.843 kb on - strand, within EX28DRAFT_3838 at 45.868 kb on + strand, within EX28DRAFT_3838 at 45.868 kb on + strand, within EX28DRAFT_3838 at 45.869 kb on - strand, within EX28DRAFT_3838 at 45.916 kb on + strand, within EX28DRAFT_3838 at 45.916 kb on + strand, within EX28DRAFT_3838 at 46.047 kb on + strand, within EX28DRAFT_3838 at 46.048 kb on - strand, within EX28DRAFT_3838 at 46.207 kb on + strand at 46.207 kb on + strand at 46.207 kb on + strand at 46.231 kb on + strand at 46.231 kb on + strand at 46.232 kb on - strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.291 kb on + strand at 46.292 kb on - strand at 46.294 kb on + strand at 46.294 kb on + strand at 46.295 kb on - strand at 46.295 kb on - strand at 46.295 kb on - strand at 46.308 kb on + strand at 46.334 kb on + strand, within EX28DRAFT_3839 at 46.506 kb on + strand, within EX28DRAFT_3839 at 46.507 kb on - strand, within EX28DRAFT_3839 at 46.507 kb on - strand, within EX28DRAFT_3839 at 46.519 kb on + strand, within EX28DRAFT_3839 at 46.519 kb on + strand, within EX28DRAFT_3839 at 46.520 kb on - strand, within EX28DRAFT_3839 at 46.671 kb on + strand at 46.672 kb on - strand at 46.710 kb on - strand at 46.721 kb on + strand at 46.773 kb on + strand at 46.773 kb on + strand at 46.774 kb on - strand at 46.783 kb on + strand at 46.784 kb on - strand at 46.837 kb on + strand at 46.846 kb on - strand at 46.914 kb on + strand at 46.936 kb on + strand at 46.937 kb on - strand at 47.021 kb on + strand at 47.443 kb on - strand, within EX28DRAFT_3840 at 47.590 kb on - strand, within EX28DRAFT_3840 at 47.676 kb on + strand, within EX28DRAFT_3840 at 47.685 kb on + strand, within EX28DRAFT_3840
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 45,397 + EX28DRAFT_3837 0.74 +0.3 45,397 + EX28DRAFT_3837 0.74 +0.3 45,398 - EX28DRAFT_3837 0.74 -0.0 45,398 - EX28DRAFT_3837 0.74 +0.9 45,398 - EX28DRAFT_3837 0.74 +0.0 45,428 + EX28DRAFT_3837 0.76 -0.2 45,600 + EX28DRAFT_3837 0.90 -0.0 45,601 - +0.5 45,601 - +0.1 45,640 + +0.5 45,640 + -0.3 45,640 + +0.7 45,641 - +0.4 45,641 - -0.2 45,641 - +0.2 45,641 - -0.7 45,641 - +1.6 45,641 - -1.5 45,641 - +2.2 45,641 - +0.2 45,641 - +0.5 45,842 + EX28DRAFT_3838 0.24 +0.0 45,842 + EX28DRAFT_3838 0.24 -1.0 45,843 - EX28DRAFT_3838 0.25 -0.2 45,868 + EX28DRAFT_3838 0.30 +0.6 45,868 + EX28DRAFT_3838 0.30 +0.5 45,869 - EX28DRAFT_3838 0.30 +1.0 45,916 + EX28DRAFT_3838 0.41 -0.3 45,916 + EX28DRAFT_3838 0.41 +0.1 46,047 + EX28DRAFT_3838 0.69 +0.3 46,048 - EX28DRAFT_3838 0.70 +1.7 46,207 + +0.2 46,207 + -1.7 46,207 + +0.2 46,231 + +0.0 46,231 + +0.2 46,232 - +1.4 46,270 + -1.0 46,270 + +1.0 46,270 + +0.6 46,270 + -0.0 46,291 + +0.3 46,292 - -0.0 46,294 + +1.2 46,294 + +0.0 46,295 - -0.2 46,295 - -0.3 46,295 - +0.8 46,308 + -0.5 46,334 + EX28DRAFT_3839 0.13 -0.1 46,506 + EX28DRAFT_3839 0.55 -0.6 46,507 - EX28DRAFT_3839 0.55 -0.9 46,507 - EX28DRAFT_3839 0.55 -0.0 46,519 + EX28DRAFT_3839 0.58 +0.3 46,519 + EX28DRAFT_3839 0.58 +0.4 46,520 - EX28DRAFT_3839 0.58 +0.4 46,671 + +1.3 46,672 - +0.4 46,710 - -0.5 46,721 + -0.3 46,773 + +0.1 46,773 + -0.2 46,774 - -0.1 46,783 + -0.5 46,784 - +0.1 46,837 + +0.0 46,846 - -0.2 46,914 + +1.1 46,936 + -0.9 46,937 - +0.3 47,021 + +1.0 47,443 - EX28DRAFT_3840 0.43 +0.3 47,590 - EX28DRAFT_3840 0.57 +0.3 47,676 + EX28DRAFT_3840 0.65 -0.5 47,685 + EX28DRAFT_3840 0.65 +0.7
Or see this region's nucleotide sequence