Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3606 and EX28DRAFT_3607 are separated by 211 nucleotides EX28DRAFT_3607 and EX28DRAFT_3608 are separated by 14 nucleotides EX28DRAFT_3608 and EX28DRAFT_3609 overlap by 1 nucleotides
EX28DRAFT_3606: EX28DRAFT_3606 - AraC-type DNA-binding domain-containing proteins, at 264,833 to 265,702
_3606
EX28DRAFT_3607: EX28DRAFT_3607 - Uncharacterized protein conserved in bacteria, at 265,914 to 266,384
_3607
EX28DRAFT_3608: EX28DRAFT_3608 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 266,399 to 267,088
_3608
EX28DRAFT_3609: EX28DRAFT_3609 - Signal transduction histidine kinase, at 267,088 to 268,512
_3609
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 265.072 kb on + strand, within EX28DRAFT_3606 at 265.072 kb on + strand, within EX28DRAFT_3606 at 265.073 kb on - strand, within EX28DRAFT_3606 at 265.075 kb on - strand, within EX28DRAFT_3606 at 265.111 kb on - strand, within EX28DRAFT_3606 at 265.269 kb on + strand, within EX28DRAFT_3606 at 265.269 kb on + strand, within EX28DRAFT_3606 at 265.270 kb on - strand, within EX28DRAFT_3606 at 265.270 kb on - strand, within EX28DRAFT_3606 at 265.270 kb on - strand, within EX28DRAFT_3606 at 265.270 kb on - strand, within EX28DRAFT_3606 at 265.320 kb on + strand, within EX28DRAFT_3606 at 265.527 kb on - strand, within EX28DRAFT_3606 at 265.543 kb on + strand, within EX28DRAFT_3606 at 265.544 kb on - strand, within EX28DRAFT_3606 at 265.545 kb on + strand, within EX28DRAFT_3606 at 265.546 kb on - strand, within EX28DRAFT_3606 at 265.546 kb on - strand, within EX28DRAFT_3606 at 265.546 kb on - strand, within EX28DRAFT_3606 at 265.702 kb on + strand at 265.702 kb on + strand at 265.702 kb on + strand at 265.702 kb on + strand at 265.703 kb on - strand at 265.703 kb on - strand at 265.703 kb on - strand at 265.703 kb on - strand at 265.703 kb on - strand at 265.703 kb on - strand at 265.703 kb on - strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.704 kb on + strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.719 kb on + strand at 265.719 kb on + strand at 265.719 kb on + strand at 265.756 kb on + strand at 265.831 kb on - strand at 265.832 kb on + strand at 265.837 kb on + strand at 265.866 kb on + strand at 266.079 kb on + strand, within EX28DRAFT_3607 at 266.196 kb on - strand, within EX28DRAFT_3607 at 266.224 kb on + strand, within EX28DRAFT_3607 at 266.277 kb on + strand, within EX28DRAFT_3607 at 266.277 kb on + strand, within EX28DRAFT_3607 at 266.277 kb on + strand, within EX28DRAFT_3607 at 266.277 kb on + strand, within EX28DRAFT_3607 at 266.277 kb on + strand, within EX28DRAFT_3607 at 266.305 kb on - strand, within EX28DRAFT_3607 at 266.330 kb on - strand, within EX28DRAFT_3607 at 266.370 kb on - strand at 266.382 kb on + strand at 266.382 kb on + strand at 266.459 kb on + strand at 266.460 kb on - strand at 266.460 kb on - strand at 266.662 kb on - strand, within EX28DRAFT_3608 at 266.699 kb on + strand, within EX28DRAFT_3608 at 266.699 kb on + strand, within EX28DRAFT_3608 at 266.700 kb on - strand, within EX28DRAFT_3608 at 266.700 kb on - strand, within EX28DRAFT_3608 at 266.946 kb on + strand, within EX28DRAFT_3608 at 267.068 kb on + strand at 267.069 kb on - strand at 267.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 265,072 + EX28DRAFT_3606 0.27 +0.1 265,072 + EX28DRAFT_3606 0.27 +0.8 265,073 - EX28DRAFT_3606 0.28 +0.1 265,075 - EX28DRAFT_3606 0.28 +0.4 265,111 - EX28DRAFT_3606 0.32 +0.5 265,269 + EX28DRAFT_3606 0.50 -0.7 265,269 + EX28DRAFT_3606 0.50 +0.1 265,270 - EX28DRAFT_3606 0.50 -1.5 265,270 - EX28DRAFT_3606 0.50 -0.5 265,270 - EX28DRAFT_3606 0.50 +0.1 265,270 - EX28DRAFT_3606 0.50 +1.2 265,320 + EX28DRAFT_3606 0.56 -0.2 265,527 - EX28DRAFT_3606 0.80 -0.1 265,543 + EX28DRAFT_3606 0.82 -0.2 265,544 - EX28DRAFT_3606 0.82 -0.4 265,545 + EX28DRAFT_3606 0.82 +0.4 265,546 - EX28DRAFT_3606 0.82 +0.8 265,546 - EX28DRAFT_3606 0.82 -0.6 265,546 - EX28DRAFT_3606 0.82 -0.9 265,702 + -1.9 265,702 + +0.7 265,702 + -2.5 265,702 + -0.0 265,703 - -1.8 265,703 - -1.4 265,703 - +0.3 265,703 - -0.1 265,703 - -1.2 265,703 - -1.2 265,703 - +0.4 265,704 + -0.4 265,704 + -0.4 265,704 + +0.5 265,704 + -0.1 265,704 + +0.1 265,704 + +0.6 265,704 + -0.6 265,704 + +1.1 265,704 + +0.3 265,705 - -1.0 265,705 - +0.1 265,705 - +0.6 265,705 - +0.4 265,705 - +0.1 265,705 - -0.2 265,705 - +1.0 265,719 + -0.2 265,719 + -0.7 265,719 + -2.9 265,756 + +0.7 265,831 - -0.3 265,832 + +0.4 265,837 + -0.3 265,866 + +0.4 266,079 + EX28DRAFT_3607 0.35 -2.7 266,196 - EX28DRAFT_3607 0.60 -0.1 266,224 + EX28DRAFT_3607 0.66 -0.3 266,277 + EX28DRAFT_3607 0.77 +0.2 266,277 + EX28DRAFT_3607 0.77 +0.6 266,277 + EX28DRAFT_3607 0.77 +0.2 266,277 + EX28DRAFT_3607 0.77 -0.1 266,277 + EX28DRAFT_3607 0.77 -0.5 266,305 - EX28DRAFT_3607 0.83 +0.0 266,330 - EX28DRAFT_3607 0.88 +0.2 266,370 - +0.4 266,382 + -0.4 266,382 + -0.4 266,459 + +0.6 266,460 - +0.3 266,460 - +0.2 266,662 - EX28DRAFT_3608 0.38 +0.6 266,699 + EX28DRAFT_3608 0.43 -0.0 266,699 + EX28DRAFT_3608 0.43 -0.7 266,700 - EX28DRAFT_3608 0.44 -0.3 266,700 - EX28DRAFT_3608 0.44 +0.2 266,946 + EX28DRAFT_3608 0.79 +0.1 267,068 + -0.7 267,069 - +1.0 267,176 + +0.8
Or see this region's nucleotide sequence