Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3453

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3452 and EX28DRAFT_3453 are separated by 675 nucleotidesEX28DRAFT_3453 and EX28DRAFT_3454 are separated by 203 nucleotides EX28DRAFT_3452: EX28DRAFT_3452 - arginine deiminase (EC 3.5.3.6), at 124,170 to 125,390 _3452 EX28DRAFT_3453: EX28DRAFT_3453 - YhcH/YjgK/YiaL family protein, at 126,066 to 126,518 _3453 EX28DRAFT_3454: EX28DRAFT_3454 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 126,722 to 127,630 _3454 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.378 kb on - strandat 125.597 kb on - strandat 125.866 kb on + strandat 125.916 kb on + strandat 125.916 kb on + strandat 125.917 kb on - strandat 125.917 kb on - strandat 126.202 kb on - strand, within EX28DRAFT_3453at 126.489 kb on - strandat 126.526 kb on + strandat 126.631 kb on + strandat 126.632 kb on - strandat 126.653 kb on + strandat 126.653 kb on + strandat 126.654 kb on - strandat 126.654 kb on - strandat 126.656 kb on + strandat 126.656 kb on + strandat 126.656 kb on + strandat 126.657 kb on - strandat 126.657 kb on - strandat 126.657 kb on - strandat 126.657 kb on - strandat 126.904 kb on + strand, within EX28DRAFT_3454at 127.052 kb on + strand, within EX28DRAFT_3454at 127.055 kb on + strand, within EX28DRAFT_3454at 127.056 kb on - strand, within EX28DRAFT_3454at 127.134 kb on - strand, within EX28DRAFT_3454at 127.135 kb on + strand, within EX28DRAFT_3454at 127.135 kb on + strand, within EX28DRAFT_3454at 127.180 kb on - strand, within EX28DRAFT_3454at 127.208 kb on - strand, within EX28DRAFT_3454at 127.208 kb on - strand, within EX28DRAFT_3454at 127.327 kb on + strand, within EX28DRAFT_3454at 127.327 kb on + strand, within EX28DRAFT_3454at 127.443 kb on - strand, within EX28DRAFT_3454at 127.475 kb on + strand, within EX28DRAFT_3454

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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125,378 - -0.5
125,597 - +0.8
125,866 + -0.9
125,916 + -0.8
125,916 + +1.7
125,917 - +0.5
125,917 - -0.2
126,202 - EX28DRAFT_3453 0.30 -0.7
126,489 - -0.2
126,526 + -2.2
126,631 + +0.6
126,632 - +0.3
126,653 + +0.0
126,653 + +0.4
126,654 - -0.7
126,654 - +1.0
126,656 + -1.3
126,656 + -0.8
126,656 + +0.1
126,657 - -0.4
126,657 - -1.2
126,657 - -0.1
126,657 - +0.4
126,904 + EX28DRAFT_3454 0.20 +0.4
127,052 + EX28DRAFT_3454 0.36 +2.0
127,055 + EX28DRAFT_3454 0.37 -0.4
127,056 - EX28DRAFT_3454 0.37 +0.3
127,134 - EX28DRAFT_3454 0.45 -0.5
127,135 + EX28DRAFT_3454 0.45 -0.2
127,135 + EX28DRAFT_3454 0.45 +0.3
127,180 - EX28DRAFT_3454 0.50 +0.1
127,208 - EX28DRAFT_3454 0.53 +0.0
127,208 - EX28DRAFT_3454 0.53 +0.2
127,327 + EX28DRAFT_3454 0.67 +0.5
127,327 + EX28DRAFT_3454 0.67 -0.4
127,443 - EX28DRAFT_3454 0.79 -0.4
127,475 + EX28DRAFT_3454 0.83 +0.8

Or see this region's nucleotide sequence