Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2469

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2467 and EX28DRAFT_2468 are separated by 52 nucleotidesEX28DRAFT_2468 and EX28DRAFT_2469 overlap by 8 nucleotidesEX28DRAFT_2469 and EX28DRAFT_2470 are separated by 143 nucleotides EX28DRAFT_2467: EX28DRAFT_2467 - Thioredoxin domain-containing protein, at 2,496,856 to 2,497,710 _2467 EX28DRAFT_2468: EX28DRAFT_2468 - TIGR00245 family protein, at 2,497,763 to 2,498,545 _2468 EX28DRAFT_2469: EX28DRAFT_2469 - ABC-type uncharacterized transport system, ATPase component, at 2,498,538 to 2,499,209 _2469 EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204 _2470 Position (kb) 2498 2499 2500Strain fitness (log2 ratio) -1 0 1 2at 2497.706 kb on - strandat 2497.812 kb on + strandat 2497.877 kb on - strand, within EX28DRAFT_2468at 2497.877 kb on - strand, within EX28DRAFT_2468at 2497.897 kb on - strand, within EX28DRAFT_2468at 2497.900 kb on + strand, within EX28DRAFT_2468at 2497.988 kb on + strand, within EX28DRAFT_2468at 2498.067 kb on - strand, within EX28DRAFT_2468at 2498.121 kb on + strand, within EX28DRAFT_2468at 2498.122 kb on - strand, within EX28DRAFT_2468at 2498.278 kb on + strand, within EX28DRAFT_2468at 2498.286 kb on + strand, within EX28DRAFT_2468at 2498.329 kb on + strand, within EX28DRAFT_2468at 2498.329 kb on + strand, within EX28DRAFT_2468at 2498.377 kb on + strand, within EX28DRAFT_2468at 2498.379 kb on + strand, within EX28DRAFT_2468at 2498.391 kb on + strand, within EX28DRAFT_2468at 2498.392 kb on - strand, within EX28DRAFT_2468at 2498.435 kb on + strand, within EX28DRAFT_2468at 2498.436 kb on - strand, within EX28DRAFT_2468at 2498.441 kb on - strand, within EX28DRAFT_2468at 2498.527 kb on + strandat 2498.527 kb on + strandat 2498.534 kb on - strandat 2498.586 kb on - strandat 2498.586 kb on - strandat 2498.608 kb on - strand, within EX28DRAFT_2469at 2498.608 kb on - strand, within EX28DRAFT_2469at 2498.645 kb on + strand, within EX28DRAFT_2469at 2498.882 kb on + strand, within EX28DRAFT_2469at 2498.957 kb on - strand, within EX28DRAFT_2469at 2499.074 kb on + strand, within EX28DRAFT_2469at 2499.100 kb on - strand, within EX28DRAFT_2469at 2499.187 kb on - strandat 2499.187 kb on - strandat 2499.187 kb on - strandat 2499.189 kb on + strandat 2499.190 kb on - strandat 2499.211 kb on - strandat 2499.235 kb on - strandat 2499.237 kb on + strandat 2499.252 kb on + strandat 2499.337 kb on - strandat 2499.345 kb on + strandat 2499.346 kb on - strandat 2499.361 kb on + strandat 2499.361 kb on + strandat 2499.361 kb on + strandat 2499.362 kb on - strandat 2499.415 kb on - strandat 2499.653 kb on - strand, within EX28DRAFT_2470at 2499.676 kb on - strand, within EX28DRAFT_2470at 2499.676 kb on - strand, within EX28DRAFT_2470at 2499.676 kb on - strand, within EX28DRAFT_2470at 2499.676 kb on - strand, within EX28DRAFT_2470at 2499.676 kb on - strand, within EX28DRAFT_2470at 2499.702 kb on + strand, within EX28DRAFT_2470at 2499.702 kb on + strand, within EX28DRAFT_2470at 2499.740 kb on - strand, within EX28DRAFT_2470at 2499.817 kb on + strand, within EX28DRAFT_2470at 2499.817 kb on + strand, within EX28DRAFT_2470at 2499.974 kb on - strand, within EX28DRAFT_2470at 2499.978 kb on + strand, within EX28DRAFT_2470at 2500.124 kb on + strandat 2500.124 kb on + strandat 2500.124 kb on + strandat 2500.124 kb on + strandat 2500.125 kb on - strandat 2500.125 kb on - strandat 2500.183 kb on + strandat 2500.184 kb on - strandat 2500.188 kb on - strandat 2500.193 kb on + strandat 2500.193 kb on + strandat 2500.194 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,497,706 - +0.3
2,497,812 + +0.2
2,497,877 - EX28DRAFT_2468 0.15 -0.1
2,497,877 - EX28DRAFT_2468 0.15 -0.4
2,497,897 - EX28DRAFT_2468 0.17 +0.0
2,497,900 + EX28DRAFT_2468 0.17 +0.4
2,497,988 + EX28DRAFT_2468 0.29 +0.1
2,498,067 - EX28DRAFT_2468 0.39 +0.5
2,498,121 + EX28DRAFT_2468 0.46 -0.7
2,498,122 - EX28DRAFT_2468 0.46 +0.1
2,498,278 + EX28DRAFT_2468 0.66 +0.0
2,498,286 + EX28DRAFT_2468 0.67 -0.9
2,498,329 + EX28DRAFT_2468 0.72 +0.8
2,498,329 + EX28DRAFT_2468 0.72 -0.1
2,498,377 + EX28DRAFT_2468 0.78 +0.7
2,498,379 + EX28DRAFT_2468 0.79 +0.6
2,498,391 + EX28DRAFT_2468 0.80 +0.6
2,498,392 - EX28DRAFT_2468 0.80 +0.1
2,498,435 + EX28DRAFT_2468 0.86 +0.6
2,498,436 - EX28DRAFT_2468 0.86 -0.5
2,498,441 - EX28DRAFT_2468 0.87 +0.4
2,498,527 + +0.0
2,498,527 + +0.2
2,498,534 - +0.8
2,498,586 - +0.9
2,498,586 - -0.7
2,498,608 - EX28DRAFT_2469 0.10 -0.2
2,498,608 - EX28DRAFT_2469 0.10 +1.3
2,498,645 + EX28DRAFT_2469 0.16 -0.3
2,498,882 + EX28DRAFT_2469 0.51 -0.5
2,498,957 - EX28DRAFT_2469 0.62 +0.2
2,499,074 + EX28DRAFT_2469 0.80 -0.6
2,499,100 - EX28DRAFT_2469 0.84 -0.9
2,499,187 - +0.5
2,499,187 - +0.1
2,499,187 - -0.4
2,499,189 + +0.8
2,499,190 - -0.3
2,499,211 - +0.3
2,499,235 - -0.0
2,499,237 + -0.2
2,499,252 + +0.7
2,499,337 - -0.4
2,499,345 + +0.7
2,499,346 - +0.5
2,499,361 + -0.1
2,499,361 + +0.0
2,499,361 + +0.6
2,499,362 - +0.5
2,499,415 - +0.3
2,499,653 - EX28DRAFT_2470 0.35 -0.1
2,499,676 - EX28DRAFT_2470 0.38 +0.7
2,499,676 - EX28DRAFT_2470 0.38 +2.4
2,499,676 - EX28DRAFT_2470 0.38 -0.6
2,499,676 - EX28DRAFT_2470 0.38 +0.8
2,499,676 - EX28DRAFT_2470 0.38 +0.0
2,499,702 + EX28DRAFT_2470 0.41 -0.1
2,499,702 + EX28DRAFT_2470 0.41 -0.1
2,499,740 - EX28DRAFT_2470 0.45 +0.1
2,499,817 + EX28DRAFT_2470 0.54 -0.1
2,499,817 + EX28DRAFT_2470 0.54 +0.9
2,499,974 - EX28DRAFT_2470 0.73 -0.7
2,499,978 + EX28DRAFT_2470 0.73 +0.8
2,500,124 + -0.8
2,500,124 + -0.2
2,500,124 + -0.6
2,500,124 + -0.8
2,500,125 - +0.4
2,500,125 - -0.5
2,500,183 + -0.3
2,500,184 - +0.0
2,500,188 - -0.8
2,500,193 + -0.3
2,500,193 + -0.5
2,500,194 - -0.2

Or see this region's nucleotide sequence