Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2432

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2431 and EX28DRAFT_2432 are separated by 103 nucleotidesEX28DRAFT_2432 and EX28DRAFT_2433 are separated by 103 nucleotides EX28DRAFT_2431: EX28DRAFT_2431 - Small-conductance mechanosensitive channel, at 2,459,792 to 2,461,036 _2431 EX28DRAFT_2432: EX28DRAFT_2432 - Gamma-aminobutyrate permease and related permeases, at 2,461,140 to 2,462,528 _2432 EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815 _2433 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -3 -2 -1 0 1at 2460.256 kb on + strand, within EX28DRAFT_2431at 2460.474 kb on + strand, within EX28DRAFT_2431at 2460.475 kb on - strand, within EX28DRAFT_2431at 2460.490 kb on + strand, within EX28DRAFT_2431at 2460.535 kb on + strand, within EX28DRAFT_2431at 2460.536 kb on - strand, within EX28DRAFT_2431at 2460.592 kb on + strand, within EX28DRAFT_2431at 2460.592 kb on + strand, within EX28DRAFT_2431at 2460.694 kb on + strand, within EX28DRAFT_2431at 2460.736 kb on - strand, within EX28DRAFT_2431at 2460.745 kb on + strand, within EX28DRAFT_2431at 2460.745 kb on + strand, within EX28DRAFT_2431at 2460.776 kb on + strand, within EX28DRAFT_2431at 2460.789 kb on - strand, within EX28DRAFT_2431at 2460.821 kb on - strand, within EX28DRAFT_2431at 2460.876 kb on + strand, within EX28DRAFT_2431at 2460.877 kb on - strand, within EX28DRAFT_2431at 2460.878 kb on + strand, within EX28DRAFT_2431at 2460.879 kb on - strand, within EX28DRAFT_2431at 2460.911 kb on + strand, within EX28DRAFT_2431at 2460.912 kb on - strandat 2461.046 kb on - strandat 2461.289 kb on - strand, within EX28DRAFT_2432at 2461.438 kb on + strand, within EX28DRAFT_2432at 2461.438 kb on + strand, within EX28DRAFT_2432at 2461.439 kb on - strand, within EX28DRAFT_2432at 2461.439 kb on - strand, within EX28DRAFT_2432at 2461.443 kb on - strand, within EX28DRAFT_2432at 2461.580 kb on - strand, within EX28DRAFT_2432at 2461.594 kb on + strand, within EX28DRAFT_2432at 2461.595 kb on - strand, within EX28DRAFT_2432at 2461.595 kb on - strand, within EX28DRAFT_2432at 2461.747 kb on + strand, within EX28DRAFT_2432at 2461.748 kb on - strand, within EX28DRAFT_2432at 2462.081 kb on + strand, within EX28DRAFT_2432at 2462.135 kb on - strand, within EX28DRAFT_2432at 2462.144 kb on - strand, within EX28DRAFT_2432at 2462.197 kb on + strand, within EX28DRAFT_2432at 2462.198 kb on - strand, within EX28DRAFT_2432at 2462.236 kb on + strand, within EX28DRAFT_2432at 2462.241 kb on - strand, within EX28DRAFT_2432at 2462.243 kb on - strand, within EX28DRAFT_2432at 2462.427 kb on + strandat 2462.428 kb on - strandat 2462.436 kb on - strandat 2462.436 kb on - strandat 2462.436 kb on - strandat 2462.533 kb on + strandat 2462.551 kb on - strandat 2462.567 kb on - strandat 2462.586 kb on - strandat 2462.633 kb on + strandat 2462.685 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.819 kb on + strandat 2462.820 kb on - strandat 2462.918 kb on + strand, within EX28DRAFT_2433at 2463.213 kb on + strand, within EX28DRAFT_2433at 2463.213 kb on + strand, within EX28DRAFT_2433at 2463.213 kb on + strand, within EX28DRAFT_2433at 2463.243 kb on - strand, within EX28DRAFT_2433at 2463.259 kb on - strand, within EX28DRAFT_2433at 2463.302 kb on + strand, within EX28DRAFT_2433at 2463.303 kb on - strand, within EX28DRAFT_2433at 2463.303 kb on - strand, within EX28DRAFT_2433at 2463.341 kb on + strand, within EX28DRAFT_2433at 2463.341 kb on + strand, within EX28DRAFT_2433at 2463.342 kb on - strand, within EX28DRAFT_2433at 2463.406 kb on - strand, within EX28DRAFT_2433

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,460,256 + EX28DRAFT_2431 0.37 +0.4
2,460,474 + EX28DRAFT_2431 0.55 -0.3
2,460,475 - EX28DRAFT_2431 0.55 +0.9
2,460,490 + EX28DRAFT_2431 0.56 -0.2
2,460,535 + EX28DRAFT_2431 0.60 +0.1
2,460,536 - EX28DRAFT_2431 0.60 -0.3
2,460,592 + EX28DRAFT_2431 0.64 -0.2
2,460,592 + EX28DRAFT_2431 0.64 +0.5
2,460,694 + EX28DRAFT_2431 0.72 +0.5
2,460,736 - EX28DRAFT_2431 0.76 -2.4
2,460,745 + EX28DRAFT_2431 0.77 +0.1
2,460,745 + EX28DRAFT_2431 0.77 -0.1
2,460,776 + EX28DRAFT_2431 0.79 +0.4
2,460,789 - EX28DRAFT_2431 0.80 -1.0
2,460,821 - EX28DRAFT_2431 0.83 +0.4
2,460,876 + EX28DRAFT_2431 0.87 +0.3
2,460,877 - EX28DRAFT_2431 0.87 -0.1
2,460,878 + EX28DRAFT_2431 0.87 -0.1
2,460,879 - EX28DRAFT_2431 0.87 -0.0
2,460,911 + EX28DRAFT_2431 0.90 -0.2
2,460,912 - -0.3
2,461,046 - +0.4
2,461,289 - EX28DRAFT_2432 0.11 -0.9
2,461,438 + EX28DRAFT_2432 0.21 +0.3
2,461,438 + EX28DRAFT_2432 0.21 -0.4
2,461,439 - EX28DRAFT_2432 0.22 -0.3
2,461,439 - EX28DRAFT_2432 0.22 +0.6
2,461,443 - EX28DRAFT_2432 0.22 -1.2
2,461,580 - EX28DRAFT_2432 0.32 -2.1
2,461,594 + EX28DRAFT_2432 0.33 +0.2
2,461,595 - EX28DRAFT_2432 0.33 -0.0
2,461,595 - EX28DRAFT_2432 0.33 +0.3
2,461,747 + EX28DRAFT_2432 0.44 +0.4
2,461,748 - EX28DRAFT_2432 0.44 -1.0
2,462,081 + EX28DRAFT_2432 0.68 -0.5
2,462,135 - EX28DRAFT_2432 0.72 -0.6
2,462,144 - EX28DRAFT_2432 0.72 -1.1
2,462,197 + EX28DRAFT_2432 0.76 -0.0
2,462,198 - EX28DRAFT_2432 0.76 -0.7
2,462,236 + EX28DRAFT_2432 0.79 +0.3
2,462,241 - EX28DRAFT_2432 0.79 +1.1
2,462,243 - EX28DRAFT_2432 0.79 -0.4
2,462,427 + -1.1
2,462,428 - -2.9
2,462,436 - +0.3
2,462,436 - -0.4
2,462,436 - +0.2
2,462,533 + +0.3
2,462,551 - -0.1
2,462,567 - -0.3
2,462,586 - -1.4
2,462,633 + +0.2
2,462,685 + -1.7
2,462,687 + -0.8
2,462,687 + -0.2
2,462,687 + -0.1
2,462,687 + -0.3
2,462,687 + +0.1
2,462,688 - -1.2
2,462,688 - -0.3
2,462,688 - -0.2
2,462,688 - -0.3
2,462,688 - -0.9
2,462,688 - +0.4
2,462,688 - +0.6
2,462,688 - -0.8
2,462,688 - +0.0
2,462,819 + +0.6
2,462,820 - +0.6
2,462,918 + EX28DRAFT_2433 0.13 +0.1
2,463,213 + EX28DRAFT_2433 0.27 +0.4
2,463,213 + EX28DRAFT_2433 0.27 +0.2
2,463,213 + EX28DRAFT_2433 0.27 -0.1
2,463,243 - EX28DRAFT_2433 0.28 +0.2
2,463,259 - EX28DRAFT_2433 0.29 +0.0
2,463,302 + EX28DRAFT_2433 0.31 +1.3
2,463,303 - EX28DRAFT_2433 0.31 +0.6
2,463,303 - EX28DRAFT_2433 0.31 +0.2
2,463,341 + EX28DRAFT_2433 0.32 +0.2
2,463,341 + EX28DRAFT_2433 0.32 -0.2
2,463,342 - EX28DRAFT_2433 0.33 -0.1
2,463,406 - EX28DRAFT_2433 0.35 +0.2

Or see this region's nucleotide sequence