Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2431 and EX28DRAFT_2432 are separated by 103 nucleotides EX28DRAFT_2432 and EX28DRAFT_2433 are separated by 103 nucleotides
EX28DRAFT_2431: EX28DRAFT_2431 - Small-conductance mechanosensitive channel, at 2,459,792 to 2,461,036
_2431
EX28DRAFT_2432: EX28DRAFT_2432 - Gamma-aminobutyrate permease and related permeases, at 2,461,140 to 2,462,528
_2432
EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815
_2433
Position (kb)
2461
2462
2463 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2460.256 kb on + strand, within EX28DRAFT_2431 at 2460.474 kb on + strand, within EX28DRAFT_2431 at 2460.475 kb on - strand, within EX28DRAFT_2431 at 2460.490 kb on + strand, within EX28DRAFT_2431 at 2460.535 kb on + strand, within EX28DRAFT_2431 at 2460.536 kb on - strand, within EX28DRAFT_2431 at 2460.592 kb on + strand, within EX28DRAFT_2431 at 2460.592 kb on + strand, within EX28DRAFT_2431 at 2460.694 kb on + strand, within EX28DRAFT_2431 at 2460.736 kb on - strand, within EX28DRAFT_2431 at 2460.745 kb on + strand, within EX28DRAFT_2431 at 2460.745 kb on + strand, within EX28DRAFT_2431 at 2460.776 kb on + strand, within EX28DRAFT_2431 at 2460.789 kb on - strand, within EX28DRAFT_2431 at 2460.821 kb on - strand, within EX28DRAFT_2431 at 2460.876 kb on + strand, within EX28DRAFT_2431 at 2460.877 kb on - strand, within EX28DRAFT_2431 at 2460.878 kb on + strand, within EX28DRAFT_2431 at 2460.879 kb on - strand, within EX28DRAFT_2431 at 2460.911 kb on + strand, within EX28DRAFT_2431 at 2460.912 kb on - strand at 2461.046 kb on - strand at 2461.289 kb on - strand, within EX28DRAFT_2432 at 2461.438 kb on + strand, within EX28DRAFT_2432 at 2461.438 kb on + strand, within EX28DRAFT_2432 at 2461.439 kb on - strand, within EX28DRAFT_2432 at 2461.439 kb on - strand, within EX28DRAFT_2432 at 2461.443 kb on - strand, within EX28DRAFT_2432 at 2461.580 kb on - strand, within EX28DRAFT_2432 at 2461.594 kb on + strand, within EX28DRAFT_2432 at 2461.595 kb on - strand, within EX28DRAFT_2432 at 2461.595 kb on - strand, within EX28DRAFT_2432 at 2461.747 kb on + strand, within EX28DRAFT_2432 at 2461.748 kb on - strand, within EX28DRAFT_2432 at 2462.081 kb on + strand, within EX28DRAFT_2432 at 2462.135 kb on - strand, within EX28DRAFT_2432 at 2462.144 kb on - strand, within EX28DRAFT_2432 at 2462.197 kb on + strand, within EX28DRAFT_2432 at 2462.198 kb on - strand, within EX28DRAFT_2432 at 2462.236 kb on + strand, within EX28DRAFT_2432 at 2462.241 kb on - strand, within EX28DRAFT_2432 at 2462.243 kb on - strand, within EX28DRAFT_2432 at 2462.427 kb on + strand at 2462.428 kb on - strand at 2462.436 kb on - strand at 2462.436 kb on - strand at 2462.436 kb on - strand at 2462.533 kb on + strand at 2462.551 kb on - strand at 2462.567 kb on - strand at 2462.586 kb on - strand at 2462.633 kb on + strand at 2462.685 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.819 kb on + strand at 2462.820 kb on - strand at 2462.918 kb on + strand, within EX28DRAFT_2433 at 2463.213 kb on + strand, within EX28DRAFT_2433 at 2463.213 kb on + strand, within EX28DRAFT_2433 at 2463.213 kb on + strand, within EX28DRAFT_2433 at 2463.243 kb on - strand, within EX28DRAFT_2433 at 2463.259 kb on - strand, within EX28DRAFT_2433 at 2463.302 kb on + strand, within EX28DRAFT_2433 at 2463.303 kb on - strand, within EX28DRAFT_2433 at 2463.303 kb on - strand, within EX28DRAFT_2433 at 2463.341 kb on + strand, within EX28DRAFT_2433 at 2463.341 kb on + strand, within EX28DRAFT_2433 at 2463.342 kb on - strand, within EX28DRAFT_2433 at 2463.406 kb on - strand, within EX28DRAFT_2433
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,460,256 + EX28DRAFT_2431 0.37 +0.4 2,460,474 + EX28DRAFT_2431 0.55 -0.3 2,460,475 - EX28DRAFT_2431 0.55 +0.9 2,460,490 + EX28DRAFT_2431 0.56 -0.2 2,460,535 + EX28DRAFT_2431 0.60 +0.1 2,460,536 - EX28DRAFT_2431 0.60 -0.3 2,460,592 + EX28DRAFT_2431 0.64 -0.2 2,460,592 + EX28DRAFT_2431 0.64 +0.5 2,460,694 + EX28DRAFT_2431 0.72 +0.5 2,460,736 - EX28DRAFT_2431 0.76 -2.4 2,460,745 + EX28DRAFT_2431 0.77 +0.1 2,460,745 + EX28DRAFT_2431 0.77 -0.1 2,460,776 + EX28DRAFT_2431 0.79 +0.4 2,460,789 - EX28DRAFT_2431 0.80 -1.0 2,460,821 - EX28DRAFT_2431 0.83 +0.4 2,460,876 + EX28DRAFT_2431 0.87 +0.3 2,460,877 - EX28DRAFT_2431 0.87 -0.1 2,460,878 + EX28DRAFT_2431 0.87 -0.1 2,460,879 - EX28DRAFT_2431 0.87 -0.0 2,460,911 + EX28DRAFT_2431 0.90 -0.2 2,460,912 - -0.3 2,461,046 - +0.4 2,461,289 - EX28DRAFT_2432 0.11 -0.9 2,461,438 + EX28DRAFT_2432 0.21 +0.3 2,461,438 + EX28DRAFT_2432 0.21 -0.4 2,461,439 - EX28DRAFT_2432 0.22 -0.3 2,461,439 - EX28DRAFT_2432 0.22 +0.6 2,461,443 - EX28DRAFT_2432 0.22 -1.2 2,461,580 - EX28DRAFT_2432 0.32 -2.1 2,461,594 + EX28DRAFT_2432 0.33 +0.2 2,461,595 - EX28DRAFT_2432 0.33 -0.0 2,461,595 - EX28DRAFT_2432 0.33 +0.3 2,461,747 + EX28DRAFT_2432 0.44 +0.4 2,461,748 - EX28DRAFT_2432 0.44 -1.0 2,462,081 + EX28DRAFT_2432 0.68 -0.5 2,462,135 - EX28DRAFT_2432 0.72 -0.6 2,462,144 - EX28DRAFT_2432 0.72 -1.1 2,462,197 + EX28DRAFT_2432 0.76 -0.0 2,462,198 - EX28DRAFT_2432 0.76 -0.7 2,462,236 + EX28DRAFT_2432 0.79 +0.3 2,462,241 - EX28DRAFT_2432 0.79 +1.1 2,462,243 - EX28DRAFT_2432 0.79 -0.4 2,462,427 + -1.1 2,462,428 - -2.9 2,462,436 - +0.3 2,462,436 - -0.4 2,462,436 - +0.2 2,462,533 + +0.3 2,462,551 - -0.1 2,462,567 - -0.3 2,462,586 - -1.4 2,462,633 + +0.2 2,462,685 + -1.7 2,462,687 + -0.8 2,462,687 + -0.2 2,462,687 + -0.1 2,462,687 + -0.3 2,462,687 + +0.1 2,462,688 - -1.2 2,462,688 - -0.3 2,462,688 - -0.2 2,462,688 - -0.3 2,462,688 - -0.9 2,462,688 - +0.4 2,462,688 - +0.6 2,462,688 - -0.8 2,462,688 - +0.0 2,462,819 + +0.6 2,462,820 - +0.6 2,462,918 + EX28DRAFT_2433 0.13 +0.1 2,463,213 + EX28DRAFT_2433 0.27 +0.4 2,463,213 + EX28DRAFT_2433 0.27 +0.2 2,463,213 + EX28DRAFT_2433 0.27 -0.1 2,463,243 - EX28DRAFT_2433 0.28 +0.2 2,463,259 - EX28DRAFT_2433 0.29 +0.0 2,463,302 + EX28DRAFT_2433 0.31 +1.3 2,463,303 - EX28DRAFT_2433 0.31 +0.6 2,463,303 - EX28DRAFT_2433 0.31 +0.2 2,463,341 + EX28DRAFT_2433 0.32 +0.2 2,463,341 + EX28DRAFT_2433 0.32 -0.2 2,463,342 - EX28DRAFT_2433 0.33 -0.1 2,463,406 - EX28DRAFT_2433 0.35 +0.2
Or see this region's nucleotide sequence