Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2071

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2069 and EX28DRAFT_2070 overlap by 4 nucleotidesEX28DRAFT_2070 and EX28DRAFT_2071 overlap by 4 nucleotidesEX28DRAFT_2071 and EX28DRAFT_2072 are separated by 1 nucleotides EX28DRAFT_2069: EX28DRAFT_2069 - Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, at 2,095,838 to 2,096,629 _2069 EX28DRAFT_2070: EX28DRAFT_2070 - Type II secretory pathway, component PulM, at 2,096,626 to 2,097,111 _2070 EX28DRAFT_2071: EX28DRAFT_2071 - Type II secretory pathway, component PulL, at 2,097,108 to 2,098,262 _2071 EX28DRAFT_2072: EX28DRAFT_2072 - Type II secretory pathway, component PulK, at 2,098,264 to 2,099,283 _2072 Position (kb) 2097 2098 2099Strain fitness (log2 ratio) -2 -1 0 1 2at 2096.131 kb on - strand, within EX28DRAFT_2069at 2096.134 kb on + strand, within EX28DRAFT_2069at 2096.224 kb on + strand, within EX28DRAFT_2069at 2096.225 kb on - strand, within EX28DRAFT_2069at 2096.225 kb on - strand, within EX28DRAFT_2069at 2096.522 kb on - strand, within EX28DRAFT_2069at 2096.522 kb on - strand, within EX28DRAFT_2069at 2096.946 kb on + strand, within EX28DRAFT_2070at 2096.951 kb on - strand, within EX28DRAFT_2070at 2096.951 kb on - strand, within EX28DRAFT_2070at 2097.115 kb on + strandat 2097.115 kb on + strandat 2097.139 kb on + strandat 2097.139 kb on + strandat 2097.221 kb on + strandat 2097.376 kb on + strand, within EX28DRAFT_2071at 2097.376 kb on + strand, within EX28DRAFT_2071at 2097.377 kb on - strand, within EX28DRAFT_2071at 2097.379 kb on + strand, within EX28DRAFT_2071at 2097.379 kb on + strand, within EX28DRAFT_2071at 2097.415 kb on + strand, within EX28DRAFT_2071at 2097.415 kb on + strand, within EX28DRAFT_2071at 2097.483 kb on - strand, within EX28DRAFT_2071at 2097.678 kb on + strand, within EX28DRAFT_2071at 2097.797 kb on - strand, within EX28DRAFT_2071at 2097.821 kb on + strand, within EX28DRAFT_2071at 2097.822 kb on - strand, within EX28DRAFT_2071at 2098.168 kb on + strandat 2098.169 kb on - strandat 2098.255 kb on - strandat 2098.265 kb on + strandat 2098.265 kb on + strandat 2098.593 kb on + strand, within EX28DRAFT_2072at 2098.594 kb on - strand, within EX28DRAFT_2072at 2098.603 kb on + strand, within EX28DRAFT_2072at 2098.603 kb on + strand, within EX28DRAFT_2072at 2098.799 kb on + strand, within EX28DRAFT_2072at 2098.818 kb on - strand, within EX28DRAFT_2072at 2098.818 kb on - strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.007 kb on + strand, within EX28DRAFT_2072at 2099.154 kb on - strand, within EX28DRAFT_2072

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,096,131 - EX28DRAFT_2069 0.37 -2.1
2,096,134 + EX28DRAFT_2069 0.37 +0.0
2,096,224 + EX28DRAFT_2069 0.49 -0.1
2,096,225 - EX28DRAFT_2069 0.49 -0.7
2,096,225 - EX28DRAFT_2069 0.49 -1.7
2,096,522 - EX28DRAFT_2069 0.86 -0.9
2,096,522 - EX28DRAFT_2069 0.86 +2.3
2,096,946 + EX28DRAFT_2070 0.66 +0.0
2,096,951 - EX28DRAFT_2070 0.67 +0.2
2,096,951 - EX28DRAFT_2070 0.67 +0.6
2,097,115 + +0.1
2,097,115 + -2.7
2,097,139 + +0.5
2,097,139 + +0.8
2,097,221 + +1.3
2,097,376 + EX28DRAFT_2071 0.23 +0.5
2,097,376 + EX28DRAFT_2071 0.23 -0.7
2,097,377 - EX28DRAFT_2071 0.23 -0.0
2,097,379 + EX28DRAFT_2071 0.23 +1.3
2,097,379 + EX28DRAFT_2071 0.23 -0.2
2,097,415 + EX28DRAFT_2071 0.27 +0.7
2,097,415 + EX28DRAFT_2071 0.27 +0.5
2,097,483 - EX28DRAFT_2071 0.32 +0.3
2,097,678 + EX28DRAFT_2071 0.49 +0.5
2,097,797 - EX28DRAFT_2071 0.60 +0.4
2,097,821 + EX28DRAFT_2071 0.62 -0.6
2,097,822 - EX28DRAFT_2071 0.62 +0.2
2,098,168 + -0.5
2,098,169 - +0.7
2,098,255 - +0.1
2,098,265 + +0.6
2,098,265 + +0.1
2,098,593 + EX28DRAFT_2072 0.32 +0.5
2,098,594 - EX28DRAFT_2072 0.32 +1.5
2,098,603 + EX28DRAFT_2072 0.33 -0.4
2,098,603 + EX28DRAFT_2072 0.33 -0.6
2,098,799 + EX28DRAFT_2072 0.52 -0.6
2,098,818 - EX28DRAFT_2072 0.54 -0.1
2,098,818 - EX28DRAFT_2072 0.54 +0.2
2,099,003 + EX28DRAFT_2072 0.72 -1.4
2,099,003 + EX28DRAFT_2072 0.72 +1.4
2,099,003 + EX28DRAFT_2072 0.72 -0.2
2,099,004 - EX28DRAFT_2072 0.73 +0.3
2,099,004 - EX28DRAFT_2072 0.73 -0.4
2,099,004 - EX28DRAFT_2072 0.73 +0.4
2,099,007 + EX28DRAFT_2072 0.73 +0.3
2,099,154 - EX28DRAFT_2072 0.87 +0.1

Or see this region's nucleotide sequence