Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0628

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0626 and EX28DRAFT_0627 are separated by 86 nucleotidesEX28DRAFT_0627 and EX28DRAFT_0628 are separated by 106 nucleotidesEX28DRAFT_0628 and EX28DRAFT_0629 are separated by 21 nucleotidesEX28DRAFT_0629 and EX28DRAFT_0630 overlap by 4 nucleotides EX28DRAFT_0626: EX28DRAFT_0626 - flagellar regulatory protein FliZ, at 623,732 to 624,283 _0626 EX28DRAFT_0627: EX28DRAFT_0627 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 624,370 to 625,170 _0627 EX28DRAFT_0628: EX28DRAFT_0628 - D-cysteine desulfhydrase (EC 4.4.1.15), at 625,277 to 626,263 _0628 EX28DRAFT_0629: EX28DRAFT_0629 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 626,285 to 626,953 _0629 EX28DRAFT_0630: EX28DRAFT_0630 - ABC-type polar amino acid transport system, ATPase component, at 626,950 to 627,702 _0630 Position (kb) 625 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 624.277 kb on - strandat 624.277 kb on - strandat 624.278 kb on + strandat 624.278 kb on + strandat 624.279 kb on - strandat 624.340 kb on - strandat 624.355 kb on + strandat 624.356 kb on - strandat 624.356 kb on - strandat 624.356 kb on - strandat 624.369 kb on + strandat 624.480 kb on - strand, within EX28DRAFT_0627at 624.643 kb on - strand, within EX28DRAFT_0627at 624.670 kb on - strand, within EX28DRAFT_0627at 624.684 kb on + strand, within EX28DRAFT_0627at 624.685 kb on - strand, within EX28DRAFT_0627at 624.722 kb on - strand, within EX28DRAFT_0627at 624.722 kb on - strand, within EX28DRAFT_0627at 624.722 kb on - strand, within EX28DRAFT_0627at 624.739 kb on + strand, within EX28DRAFT_0627at 624.792 kb on + strand, within EX28DRAFT_0627at 624.848 kb on - strand, within EX28DRAFT_0627at 624.848 kb on - strand, within EX28DRAFT_0627at 624.848 kb on - strand, within EX28DRAFT_0627at 624.895 kb on + strand, within EX28DRAFT_0627at 624.895 kb on + strand, within EX28DRAFT_0627at 624.895 kb on + strand, within EX28DRAFT_0627at 624.896 kb on - strand, within EX28DRAFT_0627at 624.896 kb on - strand, within EX28DRAFT_0627at 624.896 kb on - strand, within EX28DRAFT_0627at 624.999 kb on + strand, within EX28DRAFT_0627at 624.999 kb on + strand, within EX28DRAFT_0627at 624.999 kb on + strand, within EX28DRAFT_0627at 625.169 kb on - strandat 625.198 kb on - strandat 625.343 kb on + strandat 625.364 kb on + strandat 625.368 kb on + strandat 625.378 kb on + strand, within EX28DRAFT_0628at 625.427 kb on - strand, within EX28DRAFT_0628at 625.642 kb on + strand, within EX28DRAFT_0628at 625.643 kb on - strand, within EX28DRAFT_0628at 625.643 kb on - strand, within EX28DRAFT_0628at 625.736 kb on + strand, within EX28DRAFT_0628at 625.781 kb on + strand, within EX28DRAFT_0628at 625.977 kb on + strand, within EX28DRAFT_0628at 625.977 kb on + strand, within EX28DRAFT_0628at 626.042 kb on + strand, within EX28DRAFT_0628at 626.042 kb on + strand, within EX28DRAFT_0628at 626.042 kb on + strand, within EX28DRAFT_0628at 626.043 kb on - strand, within EX28DRAFT_0628at 626.343 kb on + strandat 626.348 kb on - strandat 626.348 kb on - strandat 626.410 kb on - strand, within EX28DRAFT_0629at 626.457 kb on - strand, within EX28DRAFT_0629at 626.457 kb on - strand, within EX28DRAFT_0629at 626.457 kb on - strand, within EX28DRAFT_0629at 626.458 kb on + strand, within EX28DRAFT_0629at 626.458 kb on + strand, within EX28DRAFT_0629at 626.459 kb on - strand, within EX28DRAFT_0629at 626.500 kb on + strand, within EX28DRAFT_0629at 626.500 kb on + strand, within EX28DRAFT_0629at 626.507 kb on + strand, within EX28DRAFT_0629at 626.507 kb on + strand, within EX28DRAFT_0629at 626.507 kb on + strand, within EX28DRAFT_0629at 626.508 kb on - strand, within EX28DRAFT_0629at 626.588 kb on + strand, within EX28DRAFT_0629at 626.588 kb on + strand, within EX28DRAFT_0629at 626.761 kb on + strand, within EX28DRAFT_0629at 626.762 kb on - strand, within EX28DRAFT_0629at 626.762 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.097 kb on - strand, within EX28DRAFT_0630at 627.186 kb on - strand, within EX28DRAFT_0630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
624,277 - +0.1
624,277 - +0.0
624,278 + +0.9
624,278 + +0.5
624,279 - +0.1
624,340 - +0.5
624,355 + -0.1
624,356 - +0.1
624,356 - +0.4
624,356 - +0.2
624,369 + +0.4
624,480 - EX28DRAFT_0627 0.14 -1.7
624,643 - EX28DRAFT_0627 0.34 +0.2
624,670 - EX28DRAFT_0627 0.37 -0.9
624,684 + EX28DRAFT_0627 0.39 +0.0
624,685 - EX28DRAFT_0627 0.39 -0.5
624,722 - EX28DRAFT_0627 0.44 -0.6
624,722 - EX28DRAFT_0627 0.44 -1.0
624,722 - EX28DRAFT_0627 0.44 +0.3
624,739 + EX28DRAFT_0627 0.46 -0.2
624,792 + EX28DRAFT_0627 0.53 -1.4
624,848 - EX28DRAFT_0627 0.60 -0.8
624,848 - EX28DRAFT_0627 0.60 +0.2
624,848 - EX28DRAFT_0627 0.60 -0.6
624,895 + EX28DRAFT_0627 0.66 +0.4
624,895 + EX28DRAFT_0627 0.66 +0.1
624,895 + EX28DRAFT_0627 0.66 -1.0
624,896 - EX28DRAFT_0627 0.66 -0.4
624,896 - EX28DRAFT_0627 0.66 +1.5
624,896 - EX28DRAFT_0627 0.66 -1.2
624,999 + EX28DRAFT_0627 0.79 +0.2
624,999 + EX28DRAFT_0627 0.79 -0.1
624,999 + EX28DRAFT_0627 0.79 +0.5
625,169 - +2.5
625,198 - -0.5
625,343 + -0.4
625,364 + +0.6
625,368 + -0.9
625,378 + EX28DRAFT_0628 0.10 +0.1
625,427 - EX28DRAFT_0628 0.15 -0.3
625,642 + EX28DRAFT_0628 0.37 -0.5
625,643 - EX28DRAFT_0628 0.37 +0.3
625,643 - EX28DRAFT_0628 0.37 +0.6
625,736 + EX28DRAFT_0628 0.47 -0.2
625,781 + EX28DRAFT_0628 0.51 +0.3
625,977 + EX28DRAFT_0628 0.71 +0.6
625,977 + EX28DRAFT_0628 0.71 +0.6
626,042 + EX28DRAFT_0628 0.78 +0.1
626,042 + EX28DRAFT_0628 0.78 -0.2
626,042 + EX28DRAFT_0628 0.78 +0.5
626,043 - EX28DRAFT_0628 0.78 +0.0
626,343 + +0.0
626,348 - -0.4
626,348 - -0.8
626,410 - EX28DRAFT_0629 0.19 -0.8
626,457 - EX28DRAFT_0629 0.26 +0.2
626,457 - EX28DRAFT_0629 0.26 +0.9
626,457 - EX28DRAFT_0629 0.26 +0.5
626,458 + EX28DRAFT_0629 0.26 +1.2
626,458 + EX28DRAFT_0629 0.26 -0.7
626,459 - EX28DRAFT_0629 0.26 +0.4
626,500 + EX28DRAFT_0629 0.32 -3.2
626,500 + EX28DRAFT_0629 0.32 -0.5
626,507 + EX28DRAFT_0629 0.33 +0.9
626,507 + EX28DRAFT_0629 0.33 -0.4
626,507 + EX28DRAFT_0629 0.33 +1.3
626,508 - EX28DRAFT_0629 0.33 +0.1
626,588 + EX28DRAFT_0629 0.45 +0.3
626,588 + EX28DRAFT_0629 0.45 -0.2
626,761 + EX28DRAFT_0629 0.71 +0.4
626,762 - EX28DRAFT_0629 0.71 +0.2
626,762 - EX28DRAFT_0629 0.71 -0.9
626,850 - EX28DRAFT_0629 0.84 +0.1
626,850 - EX28DRAFT_0629 0.84 -0.3
626,850 - EX28DRAFT_0629 0.84 -0.2
626,850 - EX28DRAFT_0629 0.84 +1.2
626,850 - EX28DRAFT_0629 0.84 +0.3
626,850 - EX28DRAFT_0629 0.84 -1.2
627,094 - EX28DRAFT_0630 0.19 +0.5
627,094 - EX28DRAFT_0630 0.19 -0.7
627,094 - EX28DRAFT_0630 0.19 +0.3
627,094 - EX28DRAFT_0630 0.19 -1.0
627,097 - EX28DRAFT_0630 0.20 +0.2
627,186 - EX28DRAFT_0630 0.31 +1.6

Or see this region's nucleotide sequence