Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0473

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0472 and EX28DRAFT_0473 overlap by 4 nucleotidesEX28DRAFT_0473 and EX28DRAFT_0474 are separated by 250 nucleotides EX28DRAFT_0471: EX28DRAFT_0471 - Sugar kinases, ribokinase family, at 453,984 to 454,937 _0471 EX28DRAFT_0472: EX28DRAFT_0472 - ADP-ribosylglycohydrolase, at 454,934 to 455,938 _0472 EX28DRAFT_0473: EX28DRAFT_0473 - nucleoside transporter, at 455,935 to 457,212 _0473 EX28DRAFT_0474: EX28DRAFT_0474 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 457,463 to 458,515 _0474 Position (kb) 455 456 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1at 454.937 kb on + strandat 454.938 kb on - strandat 455.220 kb on + strand, within EX28DRAFT_0472at 455.284 kb on + strand, within EX28DRAFT_0472at 455.284 kb on + strand, within EX28DRAFT_0472at 455.674 kb on + strand, within EX28DRAFT_0472at 455.675 kb on - strand, within EX28DRAFT_0472at 455.675 kb on - strand, within EX28DRAFT_0472at 455.794 kb on + strand, within EX28DRAFT_0472at 455.795 kb on - strand, within EX28DRAFT_0472at 455.795 kb on - strand, within EX28DRAFT_0472at 455.814 kb on - strand, within EX28DRAFT_0472at 455.940 kb on + strandat 455.940 kb on + strandat 455.940 kb on + strandat 456.024 kb on + strandat 456.025 kb on - strandat 456.114 kb on - strand, within EX28DRAFT_0473at 456.189 kb on + strand, within EX28DRAFT_0473at 456.242 kb on + strand, within EX28DRAFT_0473at 456.243 kb on - strand, within EX28DRAFT_0473at 456.247 kb on - strand, within EX28DRAFT_0473at 456.247 kb on - strand, within EX28DRAFT_0473at 456.248 kb on + strand, within EX28DRAFT_0473at 456.248 kb on + strand, within EX28DRAFT_0473at 456.249 kb on - strand, within EX28DRAFT_0473at 456.260 kb on + strand, within EX28DRAFT_0473at 456.261 kb on - strand, within EX28DRAFT_0473at 456.263 kb on + strand, within EX28DRAFT_0473at 456.264 kb on - strand, within EX28DRAFT_0473at 456.273 kb on - strand, within EX28DRAFT_0473at 456.314 kb on + strand, within EX28DRAFT_0473at 456.389 kb on - strand, within EX28DRAFT_0473at 456.399 kb on + strand, within EX28DRAFT_0473at 456.418 kb on - strand, within EX28DRAFT_0473at 456.439 kb on - strand, within EX28DRAFT_0473at 456.527 kb on + strand, within EX28DRAFT_0473at 456.527 kb on + strand, within EX28DRAFT_0473at 456.527 kb on + strand, within EX28DRAFT_0473at 456.528 kb on - strand, within EX28DRAFT_0473at 456.528 kb on - strand, within EX28DRAFT_0473at 456.528 kb on - strand, within EX28DRAFT_0473at 456.531 kb on - strand, within EX28DRAFT_0473at 456.531 kb on - strand, within EX28DRAFT_0473at 456.663 kb on + strand, within EX28DRAFT_0473at 456.663 kb on + strand, within EX28DRAFT_0473at 456.898 kb on - strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.900 kb on - strand, within EX28DRAFT_0473at 456.900 kb on - strand, within EX28DRAFT_0473at 456.900 kb on - strand, within EX28DRAFT_0473at 456.911 kb on + strand, within EX28DRAFT_0473at 456.912 kb on - strand, within EX28DRAFT_0473at 456.965 kb on + strand, within EX28DRAFT_0473at 457.163 kb on - strandat 457.252 kb on + strandat 457.318 kb on + strandat 457.319 kb on - strandat 457.377 kb on - strandat 457.457 kb on + strandat 457.523 kb on - strandat 457.565 kb on + strandat 457.618 kb on + strand, within EX28DRAFT_0474at 457.632 kb on - strand, within EX28DRAFT_0474at 457.670 kb on - strand, within EX28DRAFT_0474at 457.800 kb on - strand, within EX28DRAFT_0474at 457.879 kb on + strand, within EX28DRAFT_0474at 457.880 kb on - strand, within EX28DRAFT_0474at 457.884 kb on - strand, within EX28DRAFT_0474at 457.967 kb on + strand, within EX28DRAFT_0474at 458.098 kb on - strand, within EX28DRAFT_0474at 458.103 kb on - strand, within EX28DRAFT_0474at 458.109 kb on + strand, within EX28DRAFT_0474

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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454,937 + +0.0
454,938 - +0.3
455,220 + EX28DRAFT_0472 0.28 -0.5
455,284 + EX28DRAFT_0472 0.35 -0.3
455,284 + EX28DRAFT_0472 0.35 -0.6
455,674 + EX28DRAFT_0472 0.74 -0.7
455,675 - EX28DRAFT_0472 0.74 +0.7
455,675 - EX28DRAFT_0472 0.74 +0.2
455,794 + EX28DRAFT_0472 0.86 -0.0
455,795 - EX28DRAFT_0472 0.86 +0.0
455,795 - EX28DRAFT_0472 0.86 +0.3
455,814 - EX28DRAFT_0472 0.88 +0.4
455,940 + -0.9
455,940 + +0.9
455,940 + -0.4
456,024 + -0.5
456,025 - -0.7
456,114 - EX28DRAFT_0473 0.14 -0.2
456,189 + EX28DRAFT_0473 0.20 +0.4
456,242 + EX28DRAFT_0473 0.24 -1.9
456,243 - EX28DRAFT_0473 0.24 -0.3
456,247 - EX28DRAFT_0473 0.24 +0.5
456,247 - EX28DRAFT_0473 0.24 +0.2
456,248 + EX28DRAFT_0473 0.24 +0.4
456,248 + EX28DRAFT_0473 0.24 -0.2
456,249 - EX28DRAFT_0473 0.25 -1.0
456,260 + EX28DRAFT_0473 0.25 +0.2
456,261 - EX28DRAFT_0473 0.26 +0.3
456,263 + EX28DRAFT_0473 0.26 +1.3
456,264 - EX28DRAFT_0473 0.26 -1.7
456,273 - EX28DRAFT_0473 0.26 +0.3
456,314 + EX28DRAFT_0473 0.30 +0.5
456,389 - EX28DRAFT_0473 0.36 -0.6
456,399 + EX28DRAFT_0473 0.36 -0.7
456,418 - EX28DRAFT_0473 0.38 -0.1
456,439 - EX28DRAFT_0473 0.39 +0.4
456,527 + EX28DRAFT_0473 0.46 -0.3
456,527 + EX28DRAFT_0473 0.46 +0.1
456,527 + EX28DRAFT_0473 0.46 -0.5
456,528 - EX28DRAFT_0473 0.46 -0.3
456,528 - EX28DRAFT_0473 0.46 -1.3
456,528 - EX28DRAFT_0473 0.46 -0.4
456,531 - EX28DRAFT_0473 0.47 +1.0
456,531 - EX28DRAFT_0473 0.47 -0.3
456,663 + EX28DRAFT_0473 0.57 -2.3
456,663 + EX28DRAFT_0473 0.57 +0.5
456,898 - EX28DRAFT_0473 0.75 +0.1
456,899 + EX28DRAFT_0473 0.75 -0.3
456,899 + EX28DRAFT_0473 0.75 -0.8
456,899 + EX28DRAFT_0473 0.75 -0.1
456,899 + EX28DRAFT_0473 0.75 +0.7
456,900 - EX28DRAFT_0473 0.76 -0.1
456,900 - EX28DRAFT_0473 0.76 -0.5
456,900 - EX28DRAFT_0473 0.76 -0.4
456,911 + EX28DRAFT_0473 0.76 +0.4
456,912 - EX28DRAFT_0473 0.76 -1.3
456,965 + EX28DRAFT_0473 0.81 +1.1
457,163 - -0.1
457,252 + +0.4
457,318 + +0.4
457,319 - -0.2
457,377 - -2.9
457,457 + +0.6
457,523 - +0.3
457,565 + +0.1
457,618 + EX28DRAFT_0474 0.15 +0.4
457,632 - EX28DRAFT_0474 0.16 -0.9
457,670 - EX28DRAFT_0474 0.20 +0.3
457,800 - EX28DRAFT_0474 0.32 -0.0
457,879 + EX28DRAFT_0474 0.40 +0.1
457,880 - EX28DRAFT_0474 0.40 -0.2
457,884 - EX28DRAFT_0474 0.40 +0.3
457,967 + EX28DRAFT_0474 0.48 -0.5
458,098 - EX28DRAFT_0474 0.60 +1.7
458,103 - EX28DRAFT_0474 0.61 +0.0
458,109 + EX28DRAFT_0474 0.61 +0.3

Or see this region's nucleotide sequence