Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0455

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0454 and EX28DRAFT_0455 are separated by 827 nucleotidesEX28DRAFT_0455 and EX28DRAFT_0456 are separated by 123 nucleotidesEX28DRAFT_0456 and EX28DRAFT_0457 are separated by 24 nucleotides EX28DRAFT_0454: EX28DRAFT_0454 - hypothetical protein, at 437,093 to 437,314 _0454 EX28DRAFT_0455: EX28DRAFT_0455 - Phage integrase family, at 438,142 to 439,500 _0455 EX28DRAFT_0456: EX28DRAFT_0456 - hypothetical protein, at 439,624 to 439,882 _0456 EX28DRAFT_0457: EX28DRAFT_0457 - hypothetical protein, at 439,907 to 440,848 _0457 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.167 kb on + strand, within EX28DRAFT_0454at 437.192 kb on - strand, within EX28DRAFT_0454at 437.203 kb on + strand, within EX28DRAFT_0454at 437.306 kb on - strandat 437.786 kb on + strandat 437.806 kb on + strandat 437.948 kb on - strandat 438.024 kb on + strandat 438.187 kb on + strandat 438.188 kb on - strandat 438.188 kb on - strandat 438.191 kb on - strandat 438.191 kb on - strandat 438.221 kb on - strandat 438.537 kb on + strand, within EX28DRAFT_0455at 438.537 kb on + strand, within EX28DRAFT_0455at 438.641 kb on + strand, within EX28DRAFT_0455at 438.642 kb on - strand, within EX28DRAFT_0455at 438.642 kb on - strand, within EX28DRAFT_0455at 438.642 kb on - strand, within EX28DRAFT_0455at 438.707 kb on + strand, within EX28DRAFT_0455at 438.711 kb on - strand, within EX28DRAFT_0455at 438.815 kb on - strand, within EX28DRAFT_0455at 438.850 kb on - strand, within EX28DRAFT_0455at 438.850 kb on - strand, within EX28DRAFT_0455at 438.850 kb on - strand, within EX28DRAFT_0455at 438.856 kb on - strand, within EX28DRAFT_0455at 438.884 kb on + strand, within EX28DRAFT_0455at 438.919 kb on + strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.256 kb on + strand, within EX28DRAFT_0455at 439.257 kb on - strand, within EX28DRAFT_0455at 439.257 kb on - strand, within EX28DRAFT_0455at 439.288 kb on + strand, within EX28DRAFT_0455at 439.301 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.376 kb on + strandat 439.377 kb on - strandat 439.423 kb on - strandat 439.425 kb on + strandat 439.443 kb on + strandat 439.444 kb on - strandat 439.444 kb on - strandat 439.468 kb on + strandat 439.469 kb on - strandat 439.583 kb on - strandat 439.584 kb on + strandat 439.594 kb on - strandat 439.643 kb on - strandat 439.643 kb on - strandat 439.718 kb on + strand, within EX28DRAFT_0456at 439.718 kb on + strand, within EX28DRAFT_0456at 439.737 kb on + strand, within EX28DRAFT_0456at 439.737 kb on + strand, within EX28DRAFT_0456at 439.738 kb on - strand, within EX28DRAFT_0456at 439.767 kb on + strand, within EX28DRAFT_0456at 439.767 kb on + strand, within EX28DRAFT_0456at 439.768 kb on - strand, within EX28DRAFT_0456at 439.801 kb on - strand, within EX28DRAFT_0456at 439.807 kb on + strand, within EX28DRAFT_0456at 439.839 kb on - strand, within EX28DRAFT_0456at 439.873 kb on + strandat 439.883 kb on + strandat 439.935 kb on - strandat 439.935 kb on - strandat 439.938 kb on - strandat 439.938 kb on - strandat 439.972 kb on - strandat 440.064 kb on + strand, within EX28DRAFT_0457at 440.093 kb on - strand, within EX28DRAFT_0457at 440.280 kb on + strand, within EX28DRAFT_0457at 440.296 kb on - strand, within EX28DRAFT_0457at 440.349 kb on + strand, within EX28DRAFT_0457at 440.398 kb on + strand, within EX28DRAFT_0457at 440.399 kb on - strand, within EX28DRAFT_0457at 440.463 kb on + strand, within EX28DRAFT_0457at 440.464 kb on - strand, within EX28DRAFT_0457at 440.489 kb on + strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.497 kb on - strand, within EX28DRAFT_0457at 440.497 kb on - strand, within EX28DRAFT_0457

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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437,167 + EX28DRAFT_0454 0.33 +0.3
437,192 - EX28DRAFT_0454 0.45 -0.2
437,203 + EX28DRAFT_0454 0.50 -0.2
437,306 - +1.1
437,786 + -0.1
437,806 + -0.7
437,948 - +2.0
438,024 + +1.3
438,187 + -0.0
438,188 - -2.8
438,188 - -1.1
438,191 - -0.0
438,191 - +0.2
438,221 - +1.2
438,537 + EX28DRAFT_0455 0.29 -0.8
438,537 + EX28DRAFT_0455 0.29 +0.5
438,641 + EX28DRAFT_0455 0.37 +0.2
438,642 - EX28DRAFT_0455 0.37 +0.3
438,642 - EX28DRAFT_0455 0.37 -0.8
438,642 - EX28DRAFT_0455 0.37 -0.3
438,707 + EX28DRAFT_0455 0.42 -0.1
438,711 - EX28DRAFT_0455 0.42 -0.3
438,815 - EX28DRAFT_0455 0.50 -0.0
438,850 - EX28DRAFT_0455 0.52 +0.7
438,850 - EX28DRAFT_0455 0.52 -0.3
438,850 - EX28DRAFT_0455 0.52 -0.2
438,856 - EX28DRAFT_0455 0.53 -0.3
438,884 + EX28DRAFT_0455 0.55 +0.3
438,919 + EX28DRAFT_0455 0.57 -0.9
439,007 - EX28DRAFT_0455 0.64 -0.1
439,007 - EX28DRAFT_0455 0.64 -0.2
439,007 - EX28DRAFT_0455 0.64 +0.0
439,256 + EX28DRAFT_0455 0.82 +0.6
439,257 - EX28DRAFT_0455 0.82 -1.1
439,257 - EX28DRAFT_0455 0.82 +0.5
439,288 + EX28DRAFT_0455 0.84 -0.6
439,301 - EX28DRAFT_0455 0.85 +0.3
439,336 - EX28DRAFT_0455 0.88 -0.9
439,336 - EX28DRAFT_0455 0.88 -1.3
439,336 - EX28DRAFT_0455 0.88 -0.7
439,376 + +0.2
439,377 - +0.4
439,423 - -0.1
439,425 + -0.1
439,443 + +0.1
439,444 - -2.3
439,444 - -0.1
439,468 + -0.6
439,469 - +0.0
439,583 - +0.3
439,584 + +0.3
439,594 - +0.1
439,643 - +1.6
439,643 - +0.0
439,718 + EX28DRAFT_0456 0.36 -1.7
439,718 + EX28DRAFT_0456 0.36 +0.3
439,737 + EX28DRAFT_0456 0.44 +0.1
439,737 + EX28DRAFT_0456 0.44 -0.1
439,738 - EX28DRAFT_0456 0.44 +0.5
439,767 + EX28DRAFT_0456 0.55 -0.5
439,767 + EX28DRAFT_0456 0.55 -2.1
439,768 - EX28DRAFT_0456 0.56 -0.6
439,801 - EX28DRAFT_0456 0.68 +0.3
439,807 + EX28DRAFT_0456 0.71 -0.3
439,839 - EX28DRAFT_0456 0.83 +1.4
439,873 + -0.6
439,883 + +0.7
439,935 - -0.0
439,935 - +0.9
439,938 - +1.6
439,938 - -0.4
439,972 - -0.5
440,064 + EX28DRAFT_0457 0.17 +0.4
440,093 - EX28DRAFT_0457 0.20 -1.5
440,280 + EX28DRAFT_0457 0.40 +0.5
440,296 - EX28DRAFT_0457 0.41 -0.3
440,349 + EX28DRAFT_0457 0.47 -0.1
440,398 + EX28DRAFT_0457 0.52 +2.7
440,399 - EX28DRAFT_0457 0.52 -1.2
440,463 + EX28DRAFT_0457 0.59 -0.6
440,464 - EX28DRAFT_0457 0.59 -0.3
440,489 + EX28DRAFT_0457 0.62 -0.1
440,490 - EX28DRAFT_0457 0.62 +0.5
440,490 - EX28DRAFT_0457 0.62 +0.8
440,490 - EX28DRAFT_0457 0.62 +0.4
440,497 - EX28DRAFT_0457 0.63 -0.6
440,497 - EX28DRAFT_0457 0.63 -0.5

Or see this region's nucleotide sequence