Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0066

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0064 and EX28DRAFT_0065 are separated by 69 nucleotidesEX28DRAFT_0065 and EX28DRAFT_0066 are separated by 204 nucleotidesEX28DRAFT_0066 and EX28DRAFT_0067 are separated by 40 nucleotides EX28DRAFT_0064: EX28DRAFT_0064 - Uncharacterized conserved protein, at 6,347 to 7,045 _0064 EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534 _0065 EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869 _0066 EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599 _0067 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.965 kb on - strand, within EX28DRAFT_0064at 7.439 kb on + strand, within EX28DRAFT_0065at 7.502 kb on - strandat 7.523 kb on + strandat 7.523 kb on + strandat 7.524 kb on - strandat 7.524 kb on - strandat 7.524 kb on - strandat 7.529 kb on - strandat 7.534 kb on + strandat 7.535 kb on - strandat 7.539 kb on - strandat 7.590 kb on + strandat 7.590 kb on + strandat 7.590 kb on + strandat 7.591 kb on - strandat 7.595 kb on + strandat 7.596 kb on - strandat 7.599 kb on + strandat 7.599 kb on + strandat 7.600 kb on - strandat 7.600 kb on - strandat 7.627 kb on + strandat 7.637 kb on - strandat 7.652 kb on + strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.676 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.785 kb on - strandat 7.785 kb on - strandat 7.810 kb on + strandat 7.907 kb on - strand, within EX28DRAFT_0066at 8.210 kb on - strand, within EX28DRAFT_0066at 8.321 kb on - strand, within EX28DRAFT_0066at 8.555 kb on - strand, within EX28DRAFT_0066at 8.580 kb on + strand, within EX28DRAFT_0066at 8.629 kb on + strand, within EX28DRAFT_0066at 8.715 kb on + strand, within EX28DRAFT_0066at 8.716 kb on - strand, within EX28DRAFT_0066at 8.867 kb on + strandat 8.867 kb on + strandat 8.868 kb on - strandat 8.876 kb on + strandat 8.912 kb on - strandat 8.928 kb on + strandat 8.931 kb on + strandat 8.931 kb on + strandat 9.120 kb on + strand, within EX28DRAFT_0067at 9.146 kb on + strand, within EX28DRAFT_0067at 9.230 kb on + strand, within EX28DRAFT_0067at 9.321 kb on - strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.539 kb on + strandat 9.540 kb on - strandat 9.544 kb on + strandat 9.545 kb on - strandat 9.631 kb on - strandat 9.635 kb on + strandat 9.830 kb on + strandat 9.830 kb on + strandat 9.831 kb on - strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.835 kb on - strandat 9.836 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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6,965 - EX28DRAFT_0064 0.88 -0.3
7,439 + EX28DRAFT_0065 0.77 -1.5
7,502 - +0.1
7,523 + +1.2
7,523 + -0.5
7,524 - -1.1
7,524 - +1.4
7,524 - +0.1
7,529 - +0.6
7,534 + -0.4
7,535 - -0.8
7,539 - -0.9
7,590 + -0.6
7,590 + -0.2
7,590 + -0.1
7,591 - -2.5
7,595 + +0.0
7,596 - -0.0
7,599 + -0.8
7,599 + +0.0
7,600 - -0.2
7,600 - -0.1
7,627 + +0.8
7,637 - +2.5
7,652 + +0.3
7,653 - +1.5
7,653 - -0.7
7,676 + -0.2
7,784 + -0.8
7,784 + -0.1
7,784 + +0.0
7,784 + -0.3
7,784 + -0.2
7,784 + -0.9
7,784 + -0.5
7,784 + -0.1
7,785 - +1.1
7,785 - -1.0
7,810 + -0.7
7,907 - EX28DRAFT_0066 0.15 -0.2
8,210 - EX28DRAFT_0066 0.42 +0.1
8,321 - EX28DRAFT_0066 0.51 +1.2
8,555 - EX28DRAFT_0066 0.72 -0.3
8,580 + EX28DRAFT_0066 0.74 +0.6
8,629 + EX28DRAFT_0066 0.79 -0.0
8,715 + EX28DRAFT_0066 0.86 +0.0
8,716 - EX28DRAFT_0066 0.86 -0.5
8,867 + -0.0
8,867 + -0.3
8,868 - +0.0
8,876 + +0.3
8,912 - -1.5
8,928 + +0.2
8,931 + +0.2
8,931 + +0.3
9,120 + EX28DRAFT_0067 0.30 +0.2
9,146 + EX28DRAFT_0067 0.34 +0.1
9,230 + EX28DRAFT_0067 0.46 +1.6
9,321 - EX28DRAFT_0067 0.60 +0.6
9,322 + EX28DRAFT_0067 0.60 -2.2
9,322 + EX28DRAFT_0067 0.60 +0.5
9,322 + EX28DRAFT_0067 0.60 -0.9
9,322 + EX28DRAFT_0067 0.60 +0.2
9,323 - EX28DRAFT_0067 0.60 +0.4
9,323 - EX28DRAFT_0067 0.60 -0.1
9,323 - EX28DRAFT_0067 0.60 +0.6
9,323 - EX28DRAFT_0067 0.60 -0.3
9,323 - EX28DRAFT_0067 0.60 -1.0
9,539 + +0.3
9,540 - -0.2
9,544 + -0.4
9,545 - -0.8
9,631 - -0.2
9,635 + -0.6
9,830 + -0.2
9,830 + +0.1
9,831 - -0.6
9,832 + -0.0
9,832 + -0.1
9,832 + +0.6
9,832 + -0.1
9,832 + -0.1
9,832 + +1.4
9,832 + -0.7
9,832 + -0.8
9,833 - +0.3
9,833 - -0.4
9,833 - -0.4
9,834 + +0.1
9,834 + +1.0
9,834 + +0.0
9,835 - +0.1
9,836 + -3.3

Or see this region's nucleotide sequence