Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20650

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20645 and CA264_20650 are separated by 2 nucleotidesCA264_20650 and CA264_20655 are separated by 6 nucleotidesCA264_20655 and CA264_20660 are separated by 166 nucleotides CA264_20645: CA264_20645 - hypothetical protein, at 4,752,735 to 4,753,661 _20645 CA264_20650: CA264_20650 - diviva domain containing protein, at 4,753,664 to 4,754,653 _20650 CA264_20655: CA264_20655 - dihydroneopterin aldolase, at 4,754,660 to 4,755,016 _20655 CA264_20660: CA264_20660 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 4,755,183 to 4,756,163 _20660 Position (kb) 4753 4754 4755Strain fitness (log2 ratio) -2 -1 0 1 2at 4752.664 kb on + strandat 4752.684 kb on + strandat 4752.685 kb on - strandat 4752.700 kb on - strandat 4752.721 kb on - strandat 4752.727 kb on + strandat 4752.748 kb on + strandat 4752.755 kb on - strandat 4753.645 kb on + strandat 4753.659 kb on + strandat 4753.659 kb on + strandat 4753.659 kb on + strandat 4753.660 kb on - strandat 4753.664 kb on - strandat 4753.722 kb on + strandat 4753.723 kb on - strandat 4753.753 kb on + strandat 4753.754 kb on - strandat 4753.865 kb on + strand, within CA264_20650at 4753.865 kb on + strand, within CA264_20650at 4753.866 kb on - strand, within CA264_20650at 4753.867 kb on + strand, within CA264_20650at 4753.868 kb on - strand, within CA264_20650at 4753.868 kb on - strand, within CA264_20650at 4754.197 kb on + strand, within CA264_20650at 4754.197 kb on + strand, within CA264_20650at 4754.197 kb on + strand, within CA264_20650at 4754.260 kb on + strand, within CA264_20650at 4754.292 kb on - strand, within CA264_20650at 4754.647 kb on - strandat 4755.023 kb on + strandat 4755.027 kb on + strandat 4755.028 kb on - strandat 4755.028 kb on - strandat 4755.092 kb on - strandat 4755.092 kb on - strandat 4755.092 kb on - strandat 4755.127 kb on - strandat 4755.185 kb on - strandat 4755.185 kb on - strandat 4755.185 kb on - strandat 4755.253 kb on - strandat 4755.255 kb on - strandat 4755.289 kb on + strand, within CA264_20660at 4755.325 kb on + strand, within CA264_20660at 4755.326 kb on - strand, within CA264_20660at 4755.326 kb on - strand, within CA264_20660at 4755.326 kb on - strand, within CA264_20660at 4755.326 kb on - strand, within CA264_20660at 4755.326 kb on - strand, within CA264_20660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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4,752,664 + +0.7
4,752,684 + -0.3
4,752,685 - -0.7
4,752,700 - -0.0
4,752,721 - -0.2
4,752,727 + -1.8
4,752,748 + +0.5
4,752,755 - -1.7
4,753,645 + +0.5
4,753,659 + +0.1
4,753,659 + +1.2
4,753,659 + +0.3
4,753,660 - +0.1
4,753,664 - +0.6
4,753,722 + -0.2
4,753,723 - -0.5
4,753,753 + -1.2
4,753,754 - -0.8
4,753,865 + CA264_20650 0.20 -1.4
4,753,865 + CA264_20650 0.20 -0.3
4,753,866 - CA264_20650 0.20 -1.3
4,753,867 + CA264_20650 0.21 -0.8
4,753,868 - CA264_20650 0.21 +0.5
4,753,868 - CA264_20650 0.21 -1.1
4,754,197 + CA264_20650 0.54 -0.5
4,754,197 + CA264_20650 0.54 -0.5
4,754,197 + CA264_20650 0.54 -0.0
4,754,260 + CA264_20650 0.60 -1.0
4,754,292 - CA264_20650 0.63 -1.5
4,754,647 - +0.1
4,755,023 + +0.0
4,755,027 + +2.6
4,755,028 - -0.1
4,755,028 - +0.6
4,755,092 - -0.1
4,755,092 - -1.1
4,755,092 - +0.6
4,755,127 - -0.2
4,755,185 - +0.3
4,755,185 - -0.5
4,755,185 - -0.3
4,755,253 - -0.0
4,755,255 - -0.5
4,755,289 + CA264_20660 0.11 +0.6
4,755,325 + CA264_20660 0.14 -0.3
4,755,326 - CA264_20660 0.15 +0.2
4,755,326 - CA264_20660 0.15 -0.7
4,755,326 - CA264_20660 0.15 -1.3
4,755,326 - CA264_20660 0.15 +1.1
4,755,326 - CA264_20660 0.15 +1.0

Or see this region's nucleotide sequence