Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19760

Experiment: m.b. Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19750 and CA264_19755 are separated by 262 nucleotidesCA264_19755 and CA264_19760 are separated by 119 nucleotidesCA264_19760 and CA264_19765 are separated by 412 nucleotides CA264_19750: CA264_19750 - IMP dehydrogenase, at 4,559,242 to 4,560,711 _19750 CA264_19755: CA264_19755 - rhodanese, at 4,560,974 to 4,561,291 _19755 CA264_19760: CA264_19760 - hypothetical protein, at 4,561,411 to 4,562,124 _19760 CA264_19765: CA264_19765 - hypothetical protein, at 4,562,537 to 4,562,944 _19765 Position (kb) 4561 4562 4563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4560.441 kb on + strand, within CA264_19750at 4560.442 kb on - strand, within CA264_19750at 4560.452 kb on - strand, within CA264_19750at 4560.452 kb on - strand, within CA264_19750at 4560.597 kb on + strandat 4560.642 kb on - strandat 4560.733 kb on + strandat 4560.733 kb on + strandat 4560.760 kb on + strandat 4560.769 kb on - strandat 4560.831 kb on - strandat 4560.897 kb on - strandat 4560.941 kb on + strandat 4560.953 kb on + strandat 4560.976 kb on - strandat 4560.978 kb on + strandat 4561.313 kb on - strandat 4561.315 kb on - strandat 4561.321 kb on - strandat 4561.339 kb on - strandat 4561.392 kb on - strandat 4561.431 kb on - strandat 4561.541 kb on - strand, within CA264_19760at 4561.687 kb on + strand, within CA264_19760at 4561.691 kb on - strand, within CA264_19760at 4561.750 kb on + strand, within CA264_19760at 4561.750 kb on + strand, within CA264_19760at 4561.751 kb on - strand, within CA264_19760at 4561.751 kb on - strand, within CA264_19760at 4561.912 kb on + strand, within CA264_19760at 4562.020 kb on - strand, within CA264_19760at 4562.128 kb on + strandat 4562.229 kb on + strandat 4562.230 kb on - strandat 4562.273 kb on + strandat 4562.274 kb on + strandat 4562.274 kb on + strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.281 kb on - strandat 4562.308 kb on + strandat 4562.315 kb on + strandat 4562.316 kb on - strandat 4562.316 kb on - strandat 4562.316 kb on - strandat 4562.487 kb on - strandat 4562.487 kb on - strandat 4562.519 kb on + strandat 4562.519 kb on + strandat 4562.561 kb on + strandat 4562.561 kb on + strandat 4562.562 kb on - strandat 4562.562 kb on - strandat 4562.641 kb on + strand, within CA264_19765at 4562.642 kb on - strand, within CA264_19765at 4562.642 kb on - strand, within CA264_19765at 4562.642 kb on - strand, within CA264_19765at 4562.649 kb on - strand, within CA264_19765at 4562.651 kb on - strand, within CA264_19765at 4562.680 kb on + strand, within CA264_19765at 4562.758 kb on - strand, within CA264_19765at 4562.882 kb on + strand, within CA264_19765at 4562.882 kb on + strand, within CA264_19765at 4562.907 kb on + strandat 4562.908 kb on - strandat 4562.947 kb on + strandat 4563.087 kb on - strandat 4563.118 kb on - strandat 4563.118 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
remove
4,560,441 + CA264_19750 0.82 -0.7
4,560,442 - CA264_19750 0.82 -1.2
4,560,452 - CA264_19750 0.82 +0.5
4,560,452 - CA264_19750 0.82 +1.8
4,560,597 + -1.1
4,560,642 - -0.8
4,560,733 + -0.5
4,560,733 + -0.1
4,560,760 + +0.1
4,560,769 - -0.4
4,560,831 - +0.4
4,560,897 - -0.3
4,560,941 + +0.3
4,560,953 + +1.4
4,560,976 - -0.3
4,560,978 + -0.0
4,561,313 - -0.3
4,561,315 - +0.3
4,561,321 - -0.2
4,561,339 - -0.2
4,561,392 - +0.6
4,561,431 - +0.4
4,561,541 - CA264_19760 0.18 -0.7
4,561,687 + CA264_19760 0.39 -0.7
4,561,691 - CA264_19760 0.39 -1.6
4,561,750 + CA264_19760 0.47 +0.5
4,561,750 + CA264_19760 0.47 -1.2
4,561,751 - CA264_19760 0.48 +0.2
4,561,751 - CA264_19760 0.48 -1.6
4,561,912 + CA264_19760 0.70 -0.1
4,562,020 - CA264_19760 0.85 +0.1
4,562,128 + -0.2
4,562,229 + -0.9
4,562,230 - +0.1
4,562,273 + +0.4
4,562,274 + -0.5
4,562,274 + +0.2
4,562,275 - -0.1
4,562,275 - +1.0
4,562,275 - -0.5
4,562,275 - +0.9
4,562,275 - +0.4
4,562,278 + -0.2
4,562,278 + -0.6
4,562,278 + -0.4
4,562,278 + -0.3
4,562,281 - +0.2
4,562,308 + -0.0
4,562,315 + -0.1
4,562,316 - -0.0
4,562,316 - +0.1
4,562,316 - +0.1
4,562,487 - +1.1
4,562,487 - -3.1
4,562,519 + +0.3
4,562,519 + -0.0
4,562,561 + -1.8
4,562,561 + -0.3
4,562,562 - -0.4
4,562,562 - -0.1
4,562,641 + CA264_19765 0.25 -0.4
4,562,642 - CA264_19765 0.26 -0.1
4,562,642 - CA264_19765 0.26 -0.5
4,562,642 - CA264_19765 0.26 +0.6
4,562,649 - CA264_19765 0.27 -1.8
4,562,651 - CA264_19765 0.28 -0.4
4,562,680 + CA264_19765 0.35 +0.0
4,562,758 - CA264_19765 0.54 +0.4
4,562,882 + CA264_19765 0.85 +1.1
4,562,882 + CA264_19765 0.85 -1.8
4,562,907 + +0.3
4,562,908 - +1.6
4,562,947 + +0.8
4,563,087 - +0.9
4,563,118 - +1.0
4,563,118 - +1.4

Or see this region's nucleotide sequence