Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16355

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16350 and CA264_16355 are separated by 71 nucleotidesCA264_16355 and CA264_16360 are separated by 21 nucleotides CA264_16350: CA264_16350 - excinuclease ABC subunit C, at 3,804,616 to 3,806,436 _16350 CA264_16355: CA264_16355 - gliding motility protein GldN, at 3,806,508 to 3,807,368 _16355 CA264_16360: CA264_16360 - gliding motility protein GldM, at 3,807,390 to 3,808,982 _16360 Position (kb) 3806 3807 3808Strain fitness (log2 ratio) -2 -1 0 1 2at 3805.514 kb on + strand, within CA264_16350at 3805.515 kb on - strand, within CA264_16350at 3805.578 kb on + strand, within CA264_16350at 3805.639 kb on - strand, within CA264_16350at 3805.679 kb on - strand, within CA264_16350at 3805.682 kb on + strand, within CA264_16350at 3805.724 kb on + strand, within CA264_16350at 3805.849 kb on - strand, within CA264_16350at 3805.876 kb on - strand, within CA264_16350at 3805.913 kb on + strand, within CA264_16350at 3805.942 kb on + strand, within CA264_16350at 3806.010 kb on - strand, within CA264_16350at 3806.094 kb on + strand, within CA264_16350at 3806.154 kb on + strand, within CA264_16350at 3806.155 kb on - strand, within CA264_16350at 3806.310 kb on - strandat 3806.310 kb on - strandat 3806.317 kb on + strandat 3806.317 kb on + strandat 3806.393 kb on + strandat 3806.394 kb on - strandat 3806.510 kb on + strandat 3806.510 kb on - strandat 3806.512 kb on + strandat 3806.527 kb on + strandat 3806.533 kb on + strandat 3806.593 kb on + strandat 3806.593 kb on + strandat 3806.593 kb on + strandat 3806.748 kb on + strand, within CA264_16355at 3806.766 kb on - strand, within CA264_16355at 3806.820 kb on - strand, within CA264_16355at 3806.949 kb on - strand, within CA264_16355at 3807.185 kb on + strand, within CA264_16355at 3807.185 kb on + strand, within CA264_16355at 3807.186 kb on - strand, within CA264_16355at 3807.186 kb on - strand, within CA264_16355at 3807.279 kb on - strand, within CA264_16355at 3807.319 kb on - strandat 3807.348 kb on + strandat 3807.384 kb on + strandat 3807.388 kb on + strandat 3807.391 kb on + strandat 3807.483 kb on + strandat 3807.608 kb on + strand, within CA264_16360at 3807.630 kb on + strand, within CA264_16360at 3807.816 kb on + strand, within CA264_16360at 3807.904 kb on + strand, within CA264_16360at 3807.905 kb on - strand, within CA264_16360at 3808.091 kb on + strand, within CA264_16360at 3808.110 kb on - strand, within CA264_16360at 3808.132 kb on - strand, within CA264_16360at 3808.312 kb on - strand, within CA264_16360at 3808.348 kb on + strand, within CA264_16360at 3808.349 kb on - strand, within CA264_16360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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3,805,514 + CA264_16350 0.49 -2.1
3,805,515 - CA264_16350 0.49 -1.9
3,805,578 + CA264_16350 0.53 +1.8
3,805,639 - CA264_16350 0.56 -1.7
3,805,679 - CA264_16350 0.58 -1.4
3,805,682 + CA264_16350 0.59 -0.0
3,805,724 + CA264_16350 0.61 -0.8
3,805,849 - CA264_16350 0.68 -0.9
3,805,876 - CA264_16350 0.69 -0.3
3,805,913 + CA264_16350 0.71 -0.1
3,805,942 + CA264_16350 0.73 +0.1
3,806,010 - CA264_16350 0.77 +0.3
3,806,094 + CA264_16350 0.81 -0.5
3,806,154 + CA264_16350 0.84 -0.0
3,806,155 - CA264_16350 0.85 +0.1
3,806,310 - -0.2
3,806,310 - -0.2
3,806,317 + +0.3
3,806,317 + +0.8
3,806,393 + -0.0
3,806,394 - -0.7
3,806,510 + -0.7
3,806,510 - +0.4
3,806,512 + -0.1
3,806,527 + -0.4
3,806,533 + -0.1
3,806,593 + -0.0
3,806,593 + -0.0
3,806,593 + -1.0
3,806,748 + CA264_16355 0.28 -0.3
3,806,766 - CA264_16355 0.30 -0.7
3,806,820 - CA264_16355 0.36 +0.0
3,806,949 - CA264_16355 0.51 -2.1
3,807,185 + CA264_16355 0.79 -1.7
3,807,185 + CA264_16355 0.79 -0.9
3,807,186 - CA264_16355 0.79 -0.4
3,807,186 - CA264_16355 0.79 -1.0
3,807,279 - CA264_16355 0.90 +0.6
3,807,319 - -0.2
3,807,348 + -1.0
3,807,384 + -0.2
3,807,388 + +0.1
3,807,391 + +0.6
3,807,483 + +0.6
3,807,608 + CA264_16360 0.14 -0.7
3,807,630 + CA264_16360 0.15 +1.0
3,807,816 + CA264_16360 0.27 +0.0
3,807,904 + CA264_16360 0.32 +0.6
3,807,905 - CA264_16360 0.32 -0.6
3,808,091 + CA264_16360 0.44 -0.6
3,808,110 - CA264_16360 0.45 +0.4
3,808,132 - CA264_16360 0.47 +0.3
3,808,312 - CA264_16360 0.58 -0.7
3,808,348 + CA264_16360 0.60 -0.7
3,808,349 - CA264_16360 0.60 -1.1

Or see this region's nucleotide sequence