Experiment: m.b. Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12980 and CA264_12985 are separated by 237 nucleotides CA264_12985 and CA264_12990 are separated by 60 nucleotides CA264_12990 and CA264_12995 are separated by 182 nucleotides
CA264_12980: CA264_12980 - peptidase M28, at 3,027,086 to 3,028,642
_12980
CA264_12985: CA264_12985 - hypothetical protein, at 3,028,880 to 3,029,173
_12985
CA264_12990: CA264_12990 - ferritin, at 3,029,234 to 3,029,770
_12990
CA264_12995: CA264_12995 - hypothetical protein, at 3,029,953 to 3,030,306
_12995
Position (kb)
3028
3029
3030 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3027.909 kb on + strand, within CA264_12980 at 3028.113 kb on + strand, within CA264_12980 at 3028.200 kb on - strand, within CA264_12980 at 3028.272 kb on - strand, within CA264_12980 at 3028.274 kb on - strand, within CA264_12980 at 3028.462 kb on - strand, within CA264_12980 at 3028.474 kb on - strand, within CA264_12980 at 3028.474 kb on - strand, within CA264_12980 at 3028.474 kb on - strand, within CA264_12980 at 3028.478 kb on + strand, within CA264_12980 at 3028.478 kb on + strand, within CA264_12980 at 3028.573 kb on - strand at 3028.573 kb on - strand at 3028.585 kb on + strand at 3028.586 kb on - strand at 3028.586 kb on - strand at 3028.666 kb on - strand at 3028.764 kb on + strand at 3028.765 kb on - strand at 3028.769 kb on + strand at 3028.771 kb on + strand at 3028.771 kb on + strand at 3028.832 kb on + strand at 3028.842 kb on + strand at 3028.843 kb on - strand at 3028.877 kb on + strand at 3028.877 kb on + strand at 3028.895 kb on - strand at 3028.895 kb on - strand at 3028.911 kb on + strand, within CA264_12985 at 3028.911 kb on + strand, within CA264_12985 at 3028.912 kb on - strand, within CA264_12985 at 3028.916 kb on + strand, within CA264_12985 at 3028.916 kb on + strand, within CA264_12985 at 3028.917 kb on - strand, within CA264_12985 at 3028.917 kb on - strand, within CA264_12985 at 3028.920 kb on + strand, within CA264_12985 at 3028.920 kb on + strand, within CA264_12985 at 3028.920 kb on + strand, within CA264_12985 at 3028.920 kb on + strand, within CA264_12985 at 3028.921 kb on - strand, within CA264_12985 at 3028.921 kb on - strand, within CA264_12985 at 3029.063 kb on - strand, within CA264_12985 at 3029.068 kb on + strand, within CA264_12985 at 3029.069 kb on - strand, within CA264_12985 at 3029.069 kb on - strand, within CA264_12985 at 3029.218 kb on + strand at 3029.229 kb on + strand at 3029.289 kb on + strand, within CA264_12990 at 3029.349 kb on + strand, within CA264_12990 at 3029.350 kb on - strand, within CA264_12990 at 3029.350 kb on - strand, within CA264_12990 at 3029.350 kb on - strand, within CA264_12990 at 3029.384 kb on + strand, within CA264_12990 at 3029.404 kb on - strand, within CA264_12990 at 3029.460 kb on - strand, within CA264_12990 at 3029.525 kb on + strand, within CA264_12990 at 3029.526 kb on - strand, within CA264_12990 at 3029.615 kb on - strand, within CA264_12990 at 3029.673 kb on + strand, within CA264_12990 at 3029.673 kb on + strand, within CA264_12990 at 3029.673 kb on + strand, within CA264_12990 at 3029.674 kb on - strand, within CA264_12990 at 3029.726 kb on + strand at 3029.726 kb on + strand at 3029.727 kb on - strand at 3029.728 kb on + strand at 3029.750 kb on - strand at 3029.771 kb on - strand at 3029.785 kb on - strand at 3029.788 kb on + strand at 3029.791 kb on + strand at 3029.792 kb on - strand at 3029.792 kb on - strand at 3029.831 kb on - strand at 3029.831 kb on - strand at 3029.839 kb on - strand at 3029.841 kb on - strand at 3029.841 kb on - strand at 3029.939 kb on - strand at 3030.006 kb on + strand, within CA264_12995 at 3030.007 kb on - strand, within CA264_12995 at 3030.065 kb on + strand, within CA264_12995 at 3030.065 kb on + strand, within CA264_12995 at 3030.065 kb on + strand, within CA264_12995 at 3030.066 kb on - strand, within CA264_12995 at 3030.066 kb on - strand, within CA264_12995 at 3030.145 kb on - strand, within CA264_12995
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM remove 3,027,909 + CA264_12980 0.53 -1.1 3,028,113 + CA264_12980 0.66 -0.4 3,028,200 - CA264_12980 0.72 +0.0 3,028,272 - CA264_12980 0.76 -0.2 3,028,274 - CA264_12980 0.76 +0.5 3,028,462 - CA264_12980 0.88 +0.0 3,028,474 - CA264_12980 0.89 +0.4 3,028,474 - CA264_12980 0.89 +0.3 3,028,474 - CA264_12980 0.89 -0.9 3,028,478 + CA264_12980 0.89 -0.8 3,028,478 + CA264_12980 0.89 +0.1 3,028,573 - -1.0 3,028,573 - +0.5 3,028,585 + -0.2 3,028,586 - -0.5 3,028,586 - +0.4 3,028,666 - +0.7 3,028,764 + -1.4 3,028,765 - -0.7 3,028,769 + +0.1 3,028,771 + -2.5 3,028,771 + +0.3 3,028,832 + -0.4 3,028,842 + -0.6 3,028,843 - -0.1 3,028,877 + +0.1 3,028,877 + +1.0 3,028,895 - -1.0 3,028,895 - -0.4 3,028,911 + CA264_12985 0.11 -0.6 3,028,911 + CA264_12985 0.11 -0.6 3,028,912 - CA264_12985 0.11 -0.2 3,028,916 + CA264_12985 0.12 -0.4 3,028,916 + CA264_12985 0.12 -0.6 3,028,917 - CA264_12985 0.13 -0.9 3,028,917 - CA264_12985 0.13 -0.2 3,028,920 + CA264_12985 0.14 -0.6 3,028,920 + CA264_12985 0.14 -2.1 3,028,920 + CA264_12985 0.14 -0.9 3,028,920 + CA264_12985 0.14 -1.0 3,028,921 - CA264_12985 0.14 -3.0 3,028,921 - CA264_12985 0.14 +0.4 3,029,063 - CA264_12985 0.62 -0.9 3,029,068 + CA264_12985 0.64 -1.1 3,029,069 - CA264_12985 0.64 -1.5 3,029,069 - CA264_12985 0.64 -1.7 3,029,218 + +0.3 3,029,229 + -0.0 3,029,289 + CA264_12990 0.10 -0.9 3,029,349 + CA264_12990 0.21 +0.4 3,029,350 - CA264_12990 0.22 -0.4 3,029,350 - CA264_12990 0.22 -2.2 3,029,350 - CA264_12990 0.22 -0.9 3,029,384 + CA264_12990 0.28 -0.5 3,029,404 - CA264_12990 0.32 -0.6 3,029,460 - CA264_12990 0.42 +0.2 3,029,525 + CA264_12990 0.54 +0.2 3,029,526 - CA264_12990 0.54 -0.4 3,029,615 - CA264_12990 0.71 -1.0 3,029,673 + CA264_12990 0.82 +1.6 3,029,673 + CA264_12990 0.82 +0.7 3,029,673 + CA264_12990 0.82 +0.0 3,029,674 - CA264_12990 0.82 -0.7 3,029,726 + -1.2 3,029,726 + -0.6 3,029,727 - -0.1 3,029,728 + +1.6 3,029,750 - +0.2 3,029,771 - +0.0 3,029,785 - -0.2 3,029,788 + -0.3 3,029,791 + -0.0 3,029,792 - -0.5 3,029,792 - -0.7 3,029,831 - -0.1 3,029,831 - +0.6 3,029,839 - +0.4 3,029,841 - +1.2 3,029,841 - -0.8 3,029,939 - -0.7 3,030,006 + CA264_12995 0.15 -0.4 3,030,007 - CA264_12995 0.15 -0.3 3,030,065 + CA264_12995 0.32 -0.1 3,030,065 + CA264_12995 0.32 +1.4 3,030,065 + CA264_12995 0.32 -0.7 3,030,066 - CA264_12995 0.32 +0.6 3,030,066 - CA264_12995 0.32 -0.4 3,030,145 - CA264_12995 0.54 -1.2
Or see this region's nucleotide sequence