Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12150

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12145 and CA264_12150 are separated by 83 nucleotidesCA264_12150 and CA264_12155 are separated by 266 nucleotides CA264_12145: CA264_12145 - nucleoside-diphosphate-sugar epimerase, at 2,832,875 to 2,833,993 _12145 CA264_12150: CA264_12150 - hypothetical protein, at 2,834,077 to 2,834,874 _12150 CA264_12155: CA264_12155 - histidine phosphatase family protein, at 2,835,141 to 2,835,725 _12155 Position (kb) 2834 2835Strain fitness (log2 ratio) -2 -1 0 1at 2833.140 kb on + strand, within CA264_12145at 2833.140 kb on + strand, within CA264_12145at 2833.323 kb on + strand, within CA264_12145at 2833.446 kb on + strand, within CA264_12145at 2833.596 kb on + strand, within CA264_12145at 2833.768 kb on - strand, within CA264_12145at 2833.768 kb on - strand, within CA264_12145at 2833.993 kb on + strandat 2834.791 kb on + strand, within CA264_12150at 2834.818 kb on - strandat 2834.839 kb on - strandat 2835.035 kb on + strandat 2835.243 kb on + strand, within CA264_12155at 2835.245 kb on + strand, within CA264_12155

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,833,140 + CA264_12145 0.24 -1.7
2,833,140 + CA264_12145 0.24 -1.8
2,833,323 + CA264_12145 0.40 -2.3
2,833,446 + CA264_12145 0.51 +0.6
2,833,596 + CA264_12145 0.64 -0.6
2,833,768 - CA264_12145 0.80 -2.1
2,833,768 - CA264_12145 0.80 +0.6
2,833,993 + -1.7
2,834,791 + CA264_12150 0.89 -2.3
2,834,818 - -2.1
2,834,839 - -2.5
2,835,035 + -1.1
2,835,243 + CA264_12155 0.17 -1.4
2,835,245 + CA264_12155 0.18 -1.5

Or see this region's nucleotide sequence