Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12130

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12125 and CA264_12130 are separated by 35 nucleotidesCA264_12130 and CA264_12135 are separated by 4 nucleotides CA264_12125: CA264_12125 - glycosyl transferase family 1, at 2,827,606 to 2,828,676 _12125 CA264_12130: CA264_12130 - oxidoreductase, at 2,828,712 to 2,829,758 _12130 CA264_12135: CA264_12135 - L-iditol 2-dehydrogenase, at 2,829,763 to 2,830,716 _12135 Position (kb) 2828 2829 2830Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2827.790 kb on + strand, within CA264_12125at 2827.790 kb on + strand, within CA264_12125at 2827.790 kb on + strand, within CA264_12125at 2827.895 kb on + strand, within CA264_12125at 2827.895 kb on + strand, within CA264_12125at 2828.033 kb on + strand, within CA264_12125at 2828.033 kb on + strand, within CA264_12125at 2828.035 kb on + strand, within CA264_12125at 2828.168 kb on + strand, within CA264_12125at 2828.198 kb on + strand, within CA264_12125at 2828.286 kb on - strand, within CA264_12125at 2828.286 kb on - strand, within CA264_12125at 2828.428 kb on + strand, within CA264_12125at 2828.507 kb on + strand, within CA264_12125at 2828.626 kb on + strandat 2828.707 kb on - strandat 2828.707 kb on - strandat 2828.745 kb on + strandat 2829.000 kb on + strand, within CA264_12130at 2829.001 kb on - strand, within CA264_12130at 2829.046 kb on + strand, within CA264_12130at 2829.071 kb on + strand, within CA264_12130at 2829.075 kb on - strand, within CA264_12130at 2829.262 kb on + strand, within CA264_12130at 2829.262 kb on + strand, within CA264_12130at 2829.298 kb on + strand, within CA264_12130at 2829.299 kb on - strand, within CA264_12130at 2829.607 kb on + strand, within CA264_12130at 2829.669 kb on + strandat 2829.772 kb on + strandat 2829.858 kb on - strandat 2829.910 kb on + strand, within CA264_12135at 2829.919 kb on - strand, within CA264_12135at 2829.919 kb on - strand, within CA264_12135at 2830.300 kb on + strand, within CA264_12135at 2830.455 kb on - strand, within CA264_12135

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,827,790 + CA264_12125 0.17 -0.9
2,827,790 + CA264_12125 0.17 -0.2
2,827,790 + CA264_12125 0.17 -1.1
2,827,895 + CA264_12125 0.27 -1.9
2,827,895 + CA264_12125 0.27 -1.7
2,828,033 + CA264_12125 0.40 -2.2
2,828,033 + CA264_12125 0.40 -1.5
2,828,035 + CA264_12125 0.40 -1.6
2,828,168 + CA264_12125 0.52 -1.5
2,828,198 + CA264_12125 0.55 -0.7
2,828,286 - CA264_12125 0.63 -1.8
2,828,286 - CA264_12125 0.63 -2.9
2,828,428 + CA264_12125 0.77 -0.8
2,828,507 + CA264_12125 0.84 -1.2
2,828,626 + -0.8
2,828,707 - -1.9
2,828,707 - -3.3
2,828,745 + -1.7
2,829,000 + CA264_12130 0.28 -0.1
2,829,001 - CA264_12130 0.28 -1.8
2,829,046 + CA264_12130 0.32 +0.4
2,829,071 + CA264_12130 0.34 -1.7
2,829,075 - CA264_12130 0.35 -2.6
2,829,262 + CA264_12130 0.53 -1.6
2,829,262 + CA264_12130 0.53 -0.6
2,829,298 + CA264_12130 0.56 -1.4
2,829,299 - CA264_12130 0.56 -2.5
2,829,607 + CA264_12130 0.85 -2.0
2,829,669 + -2.2
2,829,772 + -0.8
2,829,858 - -2.4
2,829,910 + CA264_12135 0.15 -1.0
2,829,919 - CA264_12135 0.16 -2.7
2,829,919 - CA264_12135 0.16 -4.3
2,830,300 + CA264_12135 0.56 -1.0
2,830,455 - CA264_12135 0.73 -1.7

Or see this region's nucleotide sequence