Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06860

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06855 and CA264_06860 are separated by 30 nucleotidesCA264_06860 and CA264_06865 are separated by 267 nucleotidesCA264_06865 and CA264_06870 are separated by 61 nucleotides CA264_06855: CA264_06855 - nitrous oxide reductase, at 1,584,353 to 1,586,380 _06855 CA264_06860: CA264_06860 - cytochrome C, at 1,586,411 to 1,586,911 _06860 CA264_06865: CA264_06865 - hypothetical protein, at 1,587,179 to 1,587,499 _06865 CA264_06870: CA264_06870 - hypothetical protein, at 1,587,561 to 1,588,478 _06870 Position (kb) 1586 1587Strain fitness (log2 ratio) -1 0 1 2at 1585.458 kb on + strand, within CA264_06855at 1585.459 kb on - strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.464 kb on + strand, within CA264_06855at 1585.505 kb on + strand, within CA264_06855at 1585.596 kb on + strand, within CA264_06855at 1585.597 kb on - strand, within CA264_06855at 1585.597 kb on - strand, within CA264_06855at 1585.654 kb on - strand, within CA264_06855at 1585.752 kb on + strand, within CA264_06855at 1585.777 kb on - strand, within CA264_06855at 1585.833 kb on + strand, within CA264_06855at 1585.833 kb on + strand, within CA264_06855at 1585.833 kb on + strand, within CA264_06855at 1586.076 kb on + strand, within CA264_06855at 1586.148 kb on + strand, within CA264_06855at 1586.149 kb on - strand, within CA264_06855at 1586.182 kb on + strandat 1586.182 kb on + strandat 1586.183 kb on - strandat 1586.183 kb on - strandat 1586.183 kb on - strandat 1586.188 kb on + strandat 1586.188 kb on + strandat 1586.188 kb on + strandat 1586.189 kb on - strandat 1586.189 kb on - strandat 1586.189 kb on - strandat 1586.190 kb on + strandat 1586.191 kb on - strandat 1586.220 kb on + strandat 1586.290 kb on + strandat 1586.369 kb on + strandat 1586.621 kb on + strand, within CA264_06860at 1586.702 kb on + strand, within CA264_06860at 1586.702 kb on + strand, within CA264_06860at 1586.721 kb on - strand, within CA264_06860at 1586.812 kb on - strand, within CA264_06860at 1586.895 kb on - strandat 1586.911 kb on + strandat 1586.912 kb on - strandat 1586.972 kb on - strandat 1587.150 kb on + strandat 1587.151 kb on - strandat 1587.193 kb on + strandat 1587.193 kb on + strandat 1587.193 kb on + strandat 1587.224 kb on + strand, within CA264_06865at 1587.226 kb on + strand, within CA264_06865at 1587.226 kb on + strand, within CA264_06865at 1587.227 kb on - strand, within CA264_06865at 1587.236 kb on + strand, within CA264_06865at 1587.236 kb on + strand, within CA264_06865at 1587.287 kb on + strand, within CA264_06865at 1587.291 kb on + strand, within CA264_06865at 1587.442 kb on - strand, within CA264_06865at 1587.447 kb on + strand, within CA264_06865at 1587.447 kb on + strand, within CA264_06865at 1587.447 kb on + strand, within CA264_06865at 1587.448 kb on - strand, within CA264_06865at 1587.448 kb on - strand, within CA264_06865at 1587.448 kb on - strand, within CA264_06865at 1587.449 kb on + strand, within CA264_06865at 1587.449 kb on + strand, within CA264_06865at 1587.450 kb on - strand, within CA264_06865at 1587.450 kb on - strand, within CA264_06865at 1587.450 kb on - strand, within CA264_06865at 1587.450 kb on - strand, within CA264_06865at 1587.497 kb on + strandat 1587.571 kb on + strandat 1587.575 kb on + strandat 1587.576 kb on - strandat 1587.576 kb on - strandat 1587.577 kb on + strandat 1587.717 kb on - strand, within CA264_06870at 1587.732 kb on + strand, within CA264_06870at 1587.733 kb on - strand, within CA264_06870at 1587.816 kb on + strand, within CA264_06870at 1587.826 kb on + strand, within CA264_06870at 1587.826 kb on + strand, within CA264_06870at 1587.826 kb on + strand, within CA264_06870at 1587.827 kb on - strand, within CA264_06870at 1587.877 kb on + strand, within CA264_06870at 1587.878 kb on - strand, within CA264_06870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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1,585,458 + CA264_06855 0.54 +2.0
1,585,459 - CA264_06855 0.55 +0.1
1,585,461 + CA264_06855 0.55 -0.2
1,585,461 + CA264_06855 0.55 -1.2
1,585,461 + CA264_06855 0.55 -0.8
1,585,461 + CA264_06855 0.55 +1.0
1,585,464 + CA264_06855 0.55 -0.2
1,585,505 + CA264_06855 0.57 -0.6
1,585,596 + CA264_06855 0.61 +0.2
1,585,597 - CA264_06855 0.61 +0.8
1,585,597 - CA264_06855 0.61 -0.8
1,585,654 - CA264_06855 0.64 -0.3
1,585,752 + CA264_06855 0.69 -0.2
1,585,777 - CA264_06855 0.70 +0.8
1,585,833 + CA264_06855 0.73 -1.2
1,585,833 + CA264_06855 0.73 -0.1
1,585,833 + CA264_06855 0.73 +0.2
1,586,076 + CA264_06855 0.85 +0.1
1,586,148 + CA264_06855 0.89 -0.1
1,586,149 - CA264_06855 0.89 -0.7
1,586,182 + +0.8
1,586,182 + -0.6
1,586,183 - +0.7
1,586,183 - -0.1
1,586,183 - +0.2
1,586,188 + -0.7
1,586,188 + +1.1
1,586,188 + -0.0
1,586,189 - +0.2
1,586,189 - -0.3
1,586,189 - -1.1
1,586,190 + +0.3
1,586,191 - -0.5
1,586,220 + -0.5
1,586,290 + +1.7
1,586,369 + -0.8
1,586,621 + CA264_06860 0.42 +0.4
1,586,702 + CA264_06860 0.58 -1.3
1,586,702 + CA264_06860 0.58 -1.3
1,586,721 - CA264_06860 0.62 -0.4
1,586,812 - CA264_06860 0.80 -0.5
1,586,895 - -0.0
1,586,911 + +0.9
1,586,912 - +0.6
1,586,972 - +0.2
1,587,150 + +0.1
1,587,151 - +1.0
1,587,193 + -0.7
1,587,193 + -0.3
1,587,193 + +0.1
1,587,224 + CA264_06865 0.14 -0.8
1,587,226 + CA264_06865 0.15 -0.7
1,587,226 + CA264_06865 0.15 -0.9
1,587,227 - CA264_06865 0.15 -0.1
1,587,236 + CA264_06865 0.18 -0.8
1,587,236 + CA264_06865 0.18 +0.3
1,587,287 + CA264_06865 0.34 +0.1
1,587,291 + CA264_06865 0.35 -0.9
1,587,442 - CA264_06865 0.82 -0.6
1,587,447 + CA264_06865 0.83 -0.4
1,587,447 + CA264_06865 0.83 +0.2
1,587,447 + CA264_06865 0.83 -1.2
1,587,448 - CA264_06865 0.84 +0.4
1,587,448 - CA264_06865 0.84 -0.8
1,587,448 - CA264_06865 0.84 +0.2
1,587,449 + CA264_06865 0.84 +0.7
1,587,449 + CA264_06865 0.84 +0.7
1,587,450 - CA264_06865 0.84 +0.2
1,587,450 - CA264_06865 0.84 -1.1
1,587,450 - CA264_06865 0.84 -1.2
1,587,450 - CA264_06865 0.84 +0.2
1,587,497 + -1.7
1,587,571 + +0.8
1,587,575 + +0.8
1,587,576 - -0.1
1,587,576 - -0.8
1,587,577 + -0.9
1,587,717 - CA264_06870 0.17 +0.4
1,587,732 + CA264_06870 0.19 -0.5
1,587,733 - CA264_06870 0.19 +0.5
1,587,816 + CA264_06870 0.28 -0.2
1,587,826 + CA264_06870 0.29 +0.1
1,587,826 + CA264_06870 0.29 -0.1
1,587,826 + CA264_06870 0.29 -0.3
1,587,827 - CA264_06870 0.29 +0.4
1,587,877 + CA264_06870 0.34 +1.5
1,587,878 - CA264_06870 0.35 -1.4

Or see this region's nucleotide sequence