Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05515

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05505 and CA264_05510 are separated by 2 nucleotidesCA264_05510 and CA264_05515 are separated by 62 nucleotidesCA264_05515 and CA264_05520 are separated by 137 nucleotides CA264_05505: CA264_05505 - hypothetical protein, at 1,279,281 to 1,279,709 _05505 CA264_05510: CA264_05510 - UDP-glucose 4-epimerase, at 1,279,712 to 1,280,077 _05510 CA264_05515: CA264_05515 - aldehyde dehydrogenase, at 1,280,140 to 1,281,672 _05515 CA264_05520: CA264_05520 - AraC family transcriptional regulator, at 1,281,810 to 1,282,736 _05520 Position (kb) 1280 1281 1282Strain fitness (log2 ratio) -2 -1 0 1 2at 1279.168 kb on + strandat 1279.222 kb on - strandat 1279.227 kb on + strandat 1279.227 kb on + strandat 1279.284 kb on + strandat 1279.297 kb on - strandat 1279.313 kb on - strandat 1279.450 kb on + strand, within CA264_05505at 1279.462 kb on - strand, within CA264_05505at 1279.466 kb on + strand, within CA264_05505at 1279.466 kb on + strand, within CA264_05505at 1279.471 kb on + strand, within CA264_05505at 1279.471 kb on + strand, within CA264_05505at 1279.550 kb on + strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.581 kb on + strand, within CA264_05505at 1279.581 kb on + strand, within CA264_05505at 1279.582 kb on - strand, within CA264_05505at 1279.584 kb on - strand, within CA264_05505at 1279.688 kb on + strandat 1279.689 kb on - strandat 1279.747 kb on + strandat 1279.878 kb on + strand, within CA264_05510at 1279.894 kb on - strand, within CA264_05510at 1279.894 kb on - strand, within CA264_05510at 1279.954 kb on + strand, within CA264_05510at 1279.954 kb on + strand, within CA264_05510at 1279.955 kb on - strand, within CA264_05510at 1279.955 kb on - strand, within CA264_05510at 1279.955 kb on - strand, within CA264_05510at 1280.057 kb on + strandat 1280.088 kb on + strandat 1280.176 kb on - strandat 1280.176 kb on - strandat 1280.379 kb on - strand, within CA264_05515at 1280.507 kb on - strand, within CA264_05515at 1280.510 kb on + strand, within CA264_05515at 1280.510 kb on + strand, within CA264_05515at 1280.510 kb on + strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.597 kb on + strand, within CA264_05515at 1280.597 kb on + strand, within CA264_05515at 1280.598 kb on - strand, within CA264_05515at 1280.598 kb on - strand, within CA264_05515at 1280.606 kb on - strand, within CA264_05515at 1280.671 kb on + strand, within CA264_05515at 1280.721 kb on - strand, within CA264_05515at 1280.953 kb on + strand, within CA264_05515at 1281.297 kb on + strand, within CA264_05515at 1281.298 kb on - strand, within CA264_05515at 1281.388 kb on + strand, within CA264_05515at 1281.388 kb on + strand, within CA264_05515at 1281.388 kb on + strand, within CA264_05515at 1281.389 kb on - strand, within CA264_05515at 1281.389 kb on - strand, within CA264_05515at 1281.389 kb on - strand, within CA264_05515at 1281.391 kb on - strand, within CA264_05515at 1281.489 kb on + strand, within CA264_05515at 1281.605 kb on + strandat 1281.606 kb on - strandat 1281.606 kb on - strandat 1281.606 kb on - strandat 1281.673 kb on - strandat 1281.678 kb on - strandat 1281.678 kb on - strandat 1281.679 kb on + strandat 1281.704 kb on + strandat 1281.740 kb on - strandat 1281.743 kb on + strandat 1281.750 kb on + strandat 1281.758 kb on + strandat 1281.800 kb on - strandat 1281.891 kb on + strandat 1281.891 kb on + strandat 1281.891 kb on + strandat 1281.892 kb on - strandat 1281.894 kb on - strandat 1281.913 kb on + strand, within CA264_05520at 1282.271 kb on - strand, within CA264_05520at 1282.399 kb on - strand, within CA264_05520at 1282.415 kb on + strand, within CA264_05520at 1282.443 kb on + strand, within CA264_05520at 1282.443 kb on + strand, within CA264_05520at 1282.444 kb on - strand, within CA264_05520at 1282.460 kb on + strand, within CA264_05520at 1282.460 kb on + strand, within CA264_05520at 1282.548 kb on + strand, within CA264_05520at 1282.563 kb on + strand, within CA264_05520at 1282.563 kb on + strand, within CA264_05520at 1282.563 kb on + strand, within CA264_05520at 1282.638 kb on + strand, within CA264_05520at 1282.638 kb on + strand, within CA264_05520at 1282.639 kb on - strand, within CA264_05520at 1282.639 kb on - strand, within CA264_05520at 1282.639 kb on - strand, within CA264_05520at 1282.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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1,279,168 + +0.4
1,279,222 - +0.5
1,279,227 + +0.2
1,279,227 + -1.7
1,279,284 + -0.8
1,279,297 - +0.3
1,279,313 - +0.2
1,279,450 + CA264_05505 0.39 +1.2
1,279,462 - CA264_05505 0.42 -0.4
1,279,466 + CA264_05505 0.43 +0.7
1,279,466 + CA264_05505 0.43 -0.5
1,279,471 + CA264_05505 0.44 -0.0
1,279,471 + CA264_05505 0.44 +1.1
1,279,550 + CA264_05505 0.63 +0.1
1,279,551 - CA264_05505 0.63 +0.2
1,279,551 - CA264_05505 0.63 -0.8
1,279,551 - CA264_05505 0.63 +0.1
1,279,581 + CA264_05505 0.70 -0.2
1,279,581 + CA264_05505 0.70 -0.1
1,279,582 - CA264_05505 0.70 +0.1
1,279,584 - CA264_05505 0.71 +0.2
1,279,688 + -0.6
1,279,689 - -0.3
1,279,747 + +0.2
1,279,878 + CA264_05510 0.45 -0.2
1,279,894 - CA264_05510 0.50 -0.3
1,279,894 - CA264_05510 0.50 -1.1
1,279,954 + CA264_05510 0.66 -0.4
1,279,954 + CA264_05510 0.66 +0.2
1,279,955 - CA264_05510 0.66 -0.2
1,279,955 - CA264_05510 0.66 -0.9
1,279,955 - CA264_05510 0.66 -1.3
1,280,057 + -0.9
1,280,088 + -0.6
1,280,176 - +0.0
1,280,176 - -0.5
1,280,379 - CA264_05515 0.16 -0.5
1,280,507 - CA264_05515 0.24 +0.5
1,280,510 + CA264_05515 0.24 -1.9
1,280,510 + CA264_05515 0.24 -0.2
1,280,510 + CA264_05515 0.24 -0.1
1,280,511 - CA264_05515 0.24 +0.4
1,280,511 - CA264_05515 0.24 +0.0
1,280,511 - CA264_05515 0.24 -0.0
1,280,511 - CA264_05515 0.24 +0.3
1,280,511 - CA264_05515 0.24 +0.1
1,280,511 - CA264_05515 0.24 -0.9
1,280,597 + CA264_05515 0.30 -0.3
1,280,597 + CA264_05515 0.30 -1.2
1,280,598 - CA264_05515 0.30 +0.8
1,280,598 - CA264_05515 0.30 -0.2
1,280,606 - CA264_05515 0.30 -0.8
1,280,671 + CA264_05515 0.35 -0.1
1,280,721 - CA264_05515 0.38 -0.0
1,280,953 + CA264_05515 0.53 -0.4
1,281,297 + CA264_05515 0.75 +2.0
1,281,298 - CA264_05515 0.76 +0.7
1,281,388 + CA264_05515 0.81 -0.5
1,281,388 + CA264_05515 0.81 +0.2
1,281,388 + CA264_05515 0.81 +1.1
1,281,389 - CA264_05515 0.81 -1.5
1,281,389 - CA264_05515 0.81 +0.1
1,281,389 - CA264_05515 0.81 -0.3
1,281,391 - CA264_05515 0.82 +0.5
1,281,489 + CA264_05515 0.88 +0.5
1,281,605 + -0.1
1,281,606 - -1.3
1,281,606 - -0.0
1,281,606 - +0.2
1,281,673 - -0.1
1,281,678 - -0.1
1,281,678 - +0.4
1,281,679 + -1.3
1,281,704 + -0.1
1,281,740 - +1.4
1,281,743 + -0.4
1,281,750 + +0.7
1,281,758 + -0.4
1,281,800 - +0.1
1,281,891 + +1.4
1,281,891 + +0.3
1,281,891 + -0.2
1,281,892 - +0.9
1,281,894 - -0.7
1,281,913 + CA264_05520 0.11 +0.3
1,282,271 - CA264_05520 0.50 -0.1
1,282,399 - CA264_05520 0.64 +0.1
1,282,415 + CA264_05520 0.65 +0.4
1,282,443 + CA264_05520 0.68 -0.5
1,282,443 + CA264_05520 0.68 -0.6
1,282,444 - CA264_05520 0.68 +1.1
1,282,460 + CA264_05520 0.70 -0.6
1,282,460 + CA264_05520 0.70 +0.0
1,282,548 + CA264_05520 0.80 +0.0
1,282,563 + CA264_05520 0.81 -0.0
1,282,563 + CA264_05520 0.81 -0.2
1,282,563 + CA264_05520 0.81 +0.3
1,282,638 + CA264_05520 0.89 +0.9
1,282,638 + CA264_05520 0.89 -0.7
1,282,639 - CA264_05520 0.89 +0.8
1,282,639 - CA264_05520 0.89 -1.3
1,282,639 - CA264_05520 0.89 +0.6
1,282,666 - +0.4

Or see this region's nucleotide sequence