Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05265

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05255 and CA264_05260 are separated by 36 nucleotidesCA264_05260 and CA264_05265 are separated by 17 nucleotidesCA264_05265 and CA264_05270 are separated by 151 nucleotides CA264_05255: CA264_05255 - hypothetical protein, at 1,218,763 to 1,219,287 _05255 CA264_05260: CA264_05260 - hypothetical protein, at 1,219,324 to 1,219,986 _05260 CA264_05265: CA264_05265 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,220,004 to 1,220,720 _05265 CA264_05270: CA264_05270 - phosphoenolpyruvate carboxykinase (ATP), at 1,220,872 to 1,222,485 _05270 Position (kb) 1220 1221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1219.134 kb on + strand, within CA264_05255at 1219.134 kb on + strand, within CA264_05255at 1219.174 kb on + strand, within CA264_05255at 1219.282 kb on - strandat 1219.285 kb on + strandat 1219.286 kb on - strandat 1219.286 kb on - strandat 1219.286 kb on - strandat 1219.449 kb on + strand, within CA264_05260at 1219.450 kb on - strand, within CA264_05260at 1219.478 kb on - strand, within CA264_05260at 1219.564 kb on - strand, within CA264_05260at 1219.585 kb on + strand, within CA264_05260at 1219.647 kb on - strand, within CA264_05260at 1219.911 kb on + strand, within CA264_05260at 1219.917 kb on + strand, within CA264_05260at 1219.919 kb on + strand, within CA264_05260at 1219.954 kb on + strandat 1219.955 kb on - strandat 1219.955 kb on - strandat 1219.987 kb on - strandat 1219.997 kb on + strandat 1220.000 kb on - strandat 1220.000 kb on - strandat 1220.005 kb on + strandat 1220.006 kb on - strandat 1220.130 kb on + strand, within CA264_05265at 1220.131 kb on - strand, within CA264_05265at 1220.168 kb on + strand, within CA264_05265at 1220.189 kb on - strand, within CA264_05265at 1220.230 kb on - strand, within CA264_05265at 1220.241 kb on - strand, within CA264_05265at 1220.299 kb on - strand, within CA264_05265at 1220.408 kb on + strand, within CA264_05265at 1220.489 kb on + strand, within CA264_05265at 1220.490 kb on - strand, within CA264_05265at 1220.490 kb on - strand, within CA264_05265at 1220.500 kb on + strand, within CA264_05265at 1220.500 kb on + strand, within CA264_05265at 1220.516 kb on - strand, within CA264_05265at 1220.585 kb on - strand, within CA264_05265at 1220.604 kb on + strand, within CA264_05265at 1220.611 kb on + strand, within CA264_05265at 1220.613 kb on + strand, within CA264_05265at 1220.614 kb on - strand, within CA264_05265at 1220.679 kb on - strandat 1220.712 kb on + strandat 1220.729 kb on + strandat 1220.733 kb on - strandat 1220.733 kb on - strandat 1220.777 kb on - strandat 1220.777 kb on - strandat 1220.777 kb on - strandat 1220.784 kb on + strandat 1220.787 kb on - strandat 1220.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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1,219,134 + CA264_05255 0.71 +1.9
1,219,134 + CA264_05255 0.71 -0.9
1,219,174 + CA264_05255 0.78 +0.3
1,219,282 - +0.6
1,219,285 + -0.3
1,219,286 - -0.5
1,219,286 - -0.1
1,219,286 - +0.5
1,219,449 + CA264_05260 0.19 -0.2
1,219,450 - CA264_05260 0.19 +0.7
1,219,478 - CA264_05260 0.23 +0.4
1,219,564 - CA264_05260 0.36 -0.4
1,219,585 + CA264_05260 0.39 -0.4
1,219,647 - CA264_05260 0.49 -0.5
1,219,911 + CA264_05260 0.89 -0.7
1,219,917 + CA264_05260 0.89 +0.1
1,219,919 + CA264_05260 0.90 -0.9
1,219,954 + +0.4
1,219,955 - -0.5
1,219,955 - +0.3
1,219,987 - -1.2
1,219,997 + -0.9
1,220,000 - +0.2
1,220,000 - +1.7
1,220,005 + +0.7
1,220,006 - -0.5
1,220,130 + CA264_05265 0.18 -0.3
1,220,131 - CA264_05265 0.18 -0.2
1,220,168 + CA264_05265 0.23 +0.7
1,220,189 - CA264_05265 0.26 -1.3
1,220,230 - CA264_05265 0.32 +0.2
1,220,241 - CA264_05265 0.33 -0.8
1,220,299 - CA264_05265 0.41 +0.2
1,220,408 + CA264_05265 0.56 -1.4
1,220,489 + CA264_05265 0.68 -0.8
1,220,490 - CA264_05265 0.68 -1.2
1,220,490 - CA264_05265 0.68 +0.4
1,220,500 + CA264_05265 0.69 -0.5
1,220,500 + CA264_05265 0.69 -1.3
1,220,516 - CA264_05265 0.71 -1.5
1,220,585 - CA264_05265 0.81 -1.2
1,220,604 + CA264_05265 0.84 +0.1
1,220,611 + CA264_05265 0.85 +0.1
1,220,613 + CA264_05265 0.85 -1.4
1,220,614 - CA264_05265 0.85 -0.1
1,220,679 - +0.0
1,220,712 + -0.1
1,220,729 + -2.8
1,220,733 - +0.0
1,220,733 - +0.2
1,220,777 - +0.2
1,220,777 - +0.2
1,220,777 - +0.7
1,220,784 + -0.1
1,220,787 - +0.4
1,220,795 - +0.2

Or see this region's nucleotide sequence