Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6107 and Atu6108 are separated by 19 nucleotides Atu6108 and Atu6109 are separated by 517 nucleotides Atu6109 and Atu6110 are separated by 311 nucleotides
Atu6107: Atu6107 - hypothetical protein, at 129,382 to 129,606
Atu6107
Atu6108: Atu6108 - alkylphosphonate uptake protein, at 129,626 to 129,931
Atu6108
Atu6109: Atu6109 - conserved hypothetical protein, at 130,449 to 131,048
Atu6109
Atu6110: Atu6110 - antirestriction protein, at 131,360 to 132,286
Atu6110
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.464 kb on - strand, within Atu6107 at 129.492 kb on + strand, within Atu6107 at 129.500 kb on - strand, within Atu6107 at 129.510 kb on - strand, within Atu6107 at 129.614 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.627 kb on - strand at 129.627 kb on - strand at 129.627 kb on - strand at 129.663 kb on - strand, within Atu6108 at 129.702 kb on - strand, within Atu6108 at 129.729 kb on + strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.792 kb on - strand, within Atu6108 at 129.954 kb on + strand at 130.075 kb on - strand at 130.099 kb on + strand at 130.107 kb on + strand at 130.146 kb on - strand at 130.189 kb on + strand at 130.197 kb on - strand at 130.206 kb on + strand at 130.229 kb on - strand at 130.267 kb on + strand at 130.296 kb on + strand at 130.338 kb on + strand at 130.338 kb on + strand at 130.340 kb on - strand at 130.341 kb on - strand at 130.350 kb on + strand at 130.498 kb on + strand at 130.503 kb on + strand at 130.552 kb on - strand, within Atu6109 at 130.701 kb on + strand, within Atu6109 at 130.742 kb on - strand, within Atu6109 at 130.746 kb on + strand, within Atu6109 at 130.751 kb on + strand, within Atu6109 at 130.759 kb on - strand, within Atu6109 at 130.768 kb on + strand, within Atu6109 at 130.790 kb on + strand, within Atu6109 at 130.852 kb on - strand, within Atu6109 at 130.898 kb on - strand, within Atu6109 at 131.008 kb on + strand at 131.038 kb on - strand at 131.044 kb on + strand at 131.052 kb on - strand at 131.066 kb on + strand at 131.091 kb on + strand at 131.142 kb on - strand at 131.169 kb on + strand at 131.186 kb on + strand at 131.186 kb on + strand at 131.191 kb on + strand at 131.194 kb on - strand at 131.194 kb on - strand at 131.194 kb on - strand at 131.212 kb on - strand at 131.238 kb on + strand at 131.319 kb on + strand at 131.337 kb on - strand at 131.445 kb on + strand at 131.453 kb on - strand, within Atu6110 at 131.477 kb on + strand, within Atu6110 at 131.477 kb on + strand, within Atu6110 at 131.477 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.526 kb on - strand, within Atu6110 at 131.526 kb on - strand, within Atu6110 at 131.526 kb on - strand, within Atu6110 at 131.537 kb on - strand, within Atu6110 at 131.644 kb on - strand, within Atu6110 at 131.665 kb on - strand, within Atu6110 at 131.665 kb on - strand, within Atu6110 at 131.734 kb on + strand, within Atu6110 at 131.734 kb on + strand, within Atu6110 at 131.736 kb on + strand, within Atu6110 at 131.904 kb on + strand, within Atu6110 at 131.914 kb on + strand, within Atu6110 at 131.918 kb on - strand, within Atu6110 at 131.963 kb on - strand, within Atu6110 at 131.981 kb on + strand, within Atu6110 at 132.020 kb on + strand, within Atu6110 at 132.022 kb on + strand, within Atu6110 at 132.028 kb on - strand, within Atu6110
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 129,464 - Atu6107 0.36 +0.6 129,492 + Atu6107 0.49 +1.4 129,500 - Atu6107 0.52 -0.0 129,510 - Atu6107 0.57 +1.2 129,614 + -1.0 129,619 + +0.2 129,619 + +2.2 129,619 + +0.4 129,619 + +0.4 129,619 + -1.0 129,619 + -1.0 129,619 + +0.2 129,627 - +0.6 129,627 - +0.4 129,627 - +0.2 129,663 - Atu6108 0.12 -0.1 129,702 - Atu6108 0.25 +0.1 129,729 + Atu6108 0.34 +0.3 129,747 - Atu6108 0.40 +0.2 129,747 - Atu6108 0.40 -0.0 129,747 - Atu6108 0.40 -2.1 129,747 - Atu6108 0.40 -0.9 129,792 - Atu6108 0.54 +1.2 129,954 + -0.5 130,075 - +0.7 130,099 + -0.6 130,107 + +0.8 130,146 - -0.1 130,189 + -0.3 130,197 - +0.4 130,206 + -0.7 130,229 - +0.6 130,267 + +0.6 130,296 + +1.1 130,338 + +1.2 130,338 + +0.2 130,340 - -0.0 130,341 - -0.6 130,350 + -0.1 130,498 + -1.6 130,503 + +0.4 130,552 - Atu6109 0.17 +0.3 130,701 + Atu6109 0.42 -0.5 130,742 - Atu6109 0.49 -0.1 130,746 + Atu6109 0.49 -0.2 130,751 + Atu6109 0.50 -1.3 130,759 - Atu6109 0.52 -1.2 130,768 + Atu6109 0.53 -1.6 130,790 + Atu6109 0.57 -0.2 130,852 - Atu6109 0.67 +0.0 130,898 - Atu6109 0.75 -0.4 131,008 + +0.2 131,038 - +1.0 131,044 + +1.6 131,052 - -0.5 131,066 + +1.4 131,091 + +0.5 131,142 - -0.4 131,169 + +0.6 131,186 + +0.3 131,186 + +1.2 131,191 + -0.2 131,194 - -0.0 131,194 - +1.5 131,194 - -0.0 131,212 - -0.5 131,238 + -0.2 131,319 + +1.2 131,337 - -0.6 131,445 + +0.0 131,453 - Atu6110 0.10 -0.9 131,477 + Atu6110 0.13 +0.7 131,477 + Atu6110 0.13 +0.1 131,477 + Atu6110 0.13 -0.7 131,518 + Atu6110 0.17 +0.4 131,518 + Atu6110 0.17 +0.4 131,518 + Atu6110 0.17 +0.9 131,518 + Atu6110 0.17 +0.5 131,518 + Atu6110 0.17 +1.4 131,526 - Atu6110 0.18 -0.0 131,526 - Atu6110 0.18 +0.0 131,526 - Atu6110 0.18 +1.2 131,537 - Atu6110 0.19 +0.4 131,644 - Atu6110 0.31 +0.2 131,665 - Atu6110 0.33 -1.6 131,665 - Atu6110 0.33 +0.6 131,734 + Atu6110 0.40 +2.3 131,734 + Atu6110 0.40 -0.2 131,736 + Atu6110 0.41 -0.1 131,904 + Atu6110 0.59 -0.1 131,914 + Atu6110 0.60 -0.1 131,918 - Atu6110 0.60 -0.7 131,963 - Atu6110 0.65 +2.2 131,981 + Atu6110 0.67 +1.2 132,020 + Atu6110 0.71 -0.1 132,022 + Atu6110 0.71 +0.1 132,028 - Atu6110 0.72 -0.2
Or see this region's nucleotide sequence