Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23080

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00205 and AMB_RS23080 are separated by 8 nucleotidesAMB_RS23080 and AMB_RS00215 overlap by 54 nucleotides AMB_RS00205: AMB_RS00205 - threonine dehydrogenase, at 45,968 to 48,127 _RS00205 AMB_RS23080: AMB_RS23080 - hypothetical protein, at 48,136 to 48,879 _RS23080 AMB_RS00215: AMB_RS00215 - asparagine synthase (glutamine-hydrolyzing), at 48,826 to 50,583 _RS00215 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1at 48.138 kb on - strandat 48.140 kb on - strandat 48.140 kb on - strandat 48.515 kb on + strand, within AMB_RS23080at 48.730 kb on - strand, within AMB_RS23080at 48.730 kb on - strand, within AMB_RS23080at 48.730 kb on - strand, within AMB_RS23080at 48.763 kb on + strand, within AMB_RS23080at 48.768 kb on + strand, within AMB_RS23080at 48.787 kb on + strand, within AMB_RS23080at 48.787 kb on + strand, within AMB_RS23080at 48.789 kb on + strand, within AMB_RS23080at 48.789 kb on + strand, within AMB_RS23080at 48.789 kb on + strand, within AMB_RS23080at 48.791 kb on + strand, within AMB_RS23080at 48.791 kb on + strand, within AMB_RS23080at 48.791 kb on + strand, within AMB_RS23080at 48.791 kb on + strand, within AMB_RS23080

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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48,138 - -0.7
48,140 - +0.1
48,140 - -0.4
48,515 + AMB_RS23080 0.51 -2.5
48,730 - AMB_RS23080 0.80 -0.5
48,730 - AMB_RS23080 0.80 -0.3
48,730 - AMB_RS23080 0.80 -0.1
48,763 + AMB_RS23080 0.84 -0.6
48,768 + AMB_RS23080 0.85 +0.0
48,787 + AMB_RS23080 0.88 -0.1
48,787 + AMB_RS23080 0.88 -0.6
48,789 + AMB_RS23080 0.88 +0.4
48,789 + AMB_RS23080 0.88 +0.4
48,789 + AMB_RS23080 0.88 +0.1
48,791 + AMB_RS23080 0.88 +1.3
48,791 + AMB_RS23080 0.88 -0.3
48,791 + AMB_RS23080 0.88 -0.6
48,791 + AMB_RS23080 0.88 +0.3

Or see this region's nucleotide sequence