Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22770 and AMB_RS22775 are separated by 1 nucleotides AMB_RS22775 and AMB_RS22780 overlap by 46 nucleotides AMB_RS22780 and AMB_RS22785 overlap by 4 nucleotides
AMB_RS22770: AMB_RS22770 - radical SAM protein, at 4,914,509 to 4,915,636
_RS22770
AMB_RS22775: AMB_RS22775 - penicillin-binding protein activator, at 4,915,638 to 4,917,008
_RS22775
AMB_RS22780: AMB_RS22780 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 4,916,963 to 4,917,937
_RS22780
AMB_RS22785: AMB_RS22785 - YraN family protein, at 4,917,934 to 4,918,323
_RS22785
Position (kb) 4915
4916
4917
4918 Strain fitness (log2 ratio) -1
0
1
2 at 4915.271 kb on + strand, within AMB_RS22770 at 4915.272 kb on - strand, within AMB_RS22770 at 4915.272 kb on - strand, within AMB_RS22770 at 4915.272 kb on - strand, within AMB_RS22770 at 4915.639 kb on + strand at 4915.846 kb on + strand, within AMB_RS22775 at 4916.048 kb on - strand, within AMB_RS22775 at 4916.048 kb on - strand, within AMB_RS22775 at 4916.204 kb on - strand, within AMB_RS22775 at 4916.204 kb on - strand, within AMB_RS22775 at 4917.398 kb on - strand, within AMB_RS22780 at 4917.398 kb on - strand, within AMB_RS22780
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 4,915,271 + AMB_RS22770 0.68 -0.8 4,915,272 - AMB_RS22770 0.68 +0.0 4,915,272 - AMB_RS22770 0.68 +0.1 4,915,272 - AMB_RS22770 0.68 -1.7 4,915,639 + -0.2 4,915,846 + AMB_RS22775 0.15 +2.4 4,916,048 - AMB_RS22775 0.30 -0.2 4,916,048 - AMB_RS22775 0.30 +1.3 4,916,204 - AMB_RS22775 0.41 -0.4 4,916,204 - AMB_RS22775 0.41 +1.8 4,917,398 - AMB_RS22780 0.45 +1.1 4,917,398 - AMB_RS22780 0.45 +0.4
Or see this region's nucleotide sequence