Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20910 and AMB_RS20915 overlap by 4 nucleotides AMB_RS20915 and AMB_RS20920 overlap by 4 nucleotides AMB_RS20920 and AMB_RS20925 are separated by 6 nucleotides AMB_RS20925 and AMB_RS20930 are separated by 56 nucleotides
AMB_RS20910: AMB_RS20910 - hypothetical protein, at 4,541,352 to 4,541,960
_RS20910
AMB_RS20915: AMB_RS20915 - hypothetical protein, at 4,541,957 to 4,542,541
_RS20915
AMB_RS20920: AMB_RS20920 - hemerythrin, at 4,542,538 to 4,542,960
_RS20920
AMB_RS20925: AMB_RS20925 - hypothetical protein, at 4,542,967 to 4,543,848
_RS20925
AMB_RS20930: AMB_RS20930 - ATP synthase epsilon chain, at 4,543,905 to 4,544,306
_RS20930
Position (kb) 4542
4543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4541.645 kb on + strand, within AMB_RS20910 at 4541.645 kb on + strand, within AMB_RS20910 at 4541.812 kb on + strand, within AMB_RS20910 at 4541.812 kb on + strand, within AMB_RS20910 at 4541.812 kb on + strand, within AMB_RS20910 at 4541.812 kb on + strand, within AMB_RS20910 at 4541.812 kb on + strand, within AMB_RS20910 at 4541.813 kb on - strand, within AMB_RS20910 at 4541.813 kb on - strand, within AMB_RS20910 at 4541.813 kb on - strand, within AMB_RS20910 at 4542.081 kb on + strand, within AMB_RS20915 at 4542.081 kb on + strand, within AMB_RS20915 at 4542.082 kb on - strand, within AMB_RS20915 at 4542.097 kb on + strand, within AMB_RS20915 at 4542.097 kb on + strand, within AMB_RS20915 at 4542.097 kb on + strand, within AMB_RS20915 at 4542.162 kb on + strand, within AMB_RS20915 at 4542.163 kb on - strand, within AMB_RS20915 at 4542.297 kb on + strand, within AMB_RS20915 at 4542.298 kb on - strand, within AMB_RS20915 at 4542.360 kb on + strand, within AMB_RS20915 at 4542.360 kb on + strand, within AMB_RS20915 at 4542.360 kb on + strand, within AMB_RS20915 at 4542.360 kb on + strand, within AMB_RS20915 at 4542.361 kb on - strand, within AMB_RS20915 at 4542.777 kb on + strand, within AMB_RS20920 at 4542.806 kb on + strand, within AMB_RS20920 at 4542.807 kb on - strand, within AMB_RS20920 at 4542.943 kb on + strand at 4542.944 kb on - strand at 4542.968 kb on + strand at 4542.968 kb on + strand at 4542.968 kb on + strand at 4542.968 kb on + strand at 4542.969 kb on - strand at 4542.969 kb on - strand at 4543.127 kb on + strand, within AMB_RS20925 at 4543.127 kb on + strand, within AMB_RS20925 at 4543.128 kb on - strand, within AMB_RS20925 at 4543.142 kb on + strand, within AMB_RS20925 at 4543.142 kb on + strand, within AMB_RS20925 at 4543.143 kb on - strand, within AMB_RS20925 at 4543.143 kb on - strand, within AMB_RS20925 at 4543.143 kb on - strand, within AMB_RS20925 at 4543.169 kb on + strand, within AMB_RS20925 at 4543.209 kb on - strand, within AMB_RS20925 at 4543.240 kb on - strand, within AMB_RS20925 at 4543.314 kb on - strand, within AMB_RS20925 at 4543.314 kb on - strand, within AMB_RS20925 at 4543.325 kb on + strand, within AMB_RS20925 at 4543.325 kb on + strand, within AMB_RS20925 at 4543.325 kb on + strand, within AMB_RS20925 at 4543.325 kb on + strand, within AMB_RS20925 at 4543.326 kb on - strand, within AMB_RS20925 at 4543.326 kb on - strand, within AMB_RS20925 at 4543.406 kb on + strand, within AMB_RS20925 at 4543.406 kb on + strand, within AMB_RS20925 at 4543.407 kb on - strand, within AMB_RS20925 at 4543.566 kb on - strand, within AMB_RS20925 at 4543.661 kb on + strand, within AMB_RS20925 at 4543.661 kb on + strand, within AMB_RS20925 at 4543.661 kb on + strand, within AMB_RS20925 at 4543.662 kb on - strand, within AMB_RS20925 at 4543.662 kb on - strand, within AMB_RS20925 at 4543.662 kb on - strand, within AMB_RS20925 at 4543.670 kb on + strand, within AMB_RS20925
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 4,541,645 + AMB_RS20910 0.48 -0.8 4,541,645 + AMB_RS20910 0.48 -0.4 4,541,812 + AMB_RS20910 0.76 -0.2 4,541,812 + AMB_RS20910 0.76 -0.1 4,541,812 + AMB_RS20910 0.76 -0.2 4,541,812 + AMB_RS20910 0.76 -1.2 4,541,812 + AMB_RS20910 0.76 -0.7 4,541,813 - AMB_RS20910 0.76 +2.6 4,541,813 - AMB_RS20910 0.76 -3.1 4,541,813 - AMB_RS20910 0.76 +0.3 4,542,081 + AMB_RS20915 0.21 +0.5 4,542,081 + AMB_RS20915 0.21 +0.8 4,542,082 - AMB_RS20915 0.21 -0.3 4,542,097 + AMB_RS20915 0.24 -0.0 4,542,097 + AMB_RS20915 0.24 +1.3 4,542,097 + AMB_RS20915 0.24 -0.8 4,542,162 + AMB_RS20915 0.35 -0.7 4,542,163 - AMB_RS20915 0.35 -0.1 4,542,297 + AMB_RS20915 0.58 -0.9 4,542,298 - AMB_RS20915 0.58 +1.0 4,542,360 + AMB_RS20915 0.69 +0.4 4,542,360 + AMB_RS20915 0.69 +0.1 4,542,360 + AMB_RS20915 0.69 -0.2 4,542,360 + AMB_RS20915 0.69 +0.5 4,542,361 - AMB_RS20915 0.69 +0.4 4,542,777 + AMB_RS20920 0.57 -0.3 4,542,806 + AMB_RS20920 0.63 -0.9 4,542,807 - AMB_RS20920 0.64 -0.7 4,542,943 + +2.8 4,542,944 - +0.3 4,542,968 + -0.7 4,542,968 + -0.4 4,542,968 + -0.1 4,542,968 + -1.4 4,542,969 - -0.4 4,542,969 - -1.2 4,543,127 + AMB_RS20925 0.18 +0.2 4,543,127 + AMB_RS20925 0.18 +0.3 4,543,128 - AMB_RS20925 0.18 -0.3 4,543,142 + AMB_RS20925 0.20 +0.0 4,543,142 + AMB_RS20925 0.20 +0.3 4,543,143 - AMB_RS20925 0.20 -1.7 4,543,143 - AMB_RS20925 0.20 +0.4 4,543,143 - AMB_RS20925 0.20 -0.1 4,543,169 + AMB_RS20925 0.23 +0.3 4,543,209 - AMB_RS20925 0.27 -0.8 4,543,240 - AMB_RS20925 0.31 +0.2 4,543,314 - AMB_RS20925 0.39 -0.3 4,543,314 - AMB_RS20925 0.39 -0.2 4,543,325 + AMB_RS20925 0.41 -0.3 4,543,325 + AMB_RS20925 0.41 +0.5 4,543,325 + AMB_RS20925 0.41 +0.4 4,543,325 + AMB_RS20925 0.41 +0.3 4,543,326 - AMB_RS20925 0.41 -1.6 4,543,326 - AMB_RS20925 0.41 +0.3 4,543,406 + AMB_RS20925 0.50 -0.6 4,543,406 + AMB_RS20925 0.50 +0.1 4,543,407 - AMB_RS20925 0.50 -2.1 4,543,566 - AMB_RS20925 0.68 -0.4 4,543,661 + AMB_RS20925 0.79 -0.0 4,543,661 + AMB_RS20925 0.79 +0.3 4,543,661 + AMB_RS20925 0.79 -0.1 4,543,662 - AMB_RS20925 0.79 -0.3 4,543,662 - AMB_RS20925 0.79 +0.3 4,543,662 - AMB_RS20925 0.79 -1.4 4,543,670 + AMB_RS20925 0.80 -0.4
Or see this region's nucleotide sequence