Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19670 and AMB_RS19675 overlap by 14 nucleotides AMB_RS19675 and AMB_RS19680 are separated by 186 nucleotides AMB_RS19680 and AMB_RS19685 are separated by 2 nucleotides
AMB_RS19670: AMB_RS19670 - metal-transporting ATPase, at 4,295,366 to 4,297,975
_RS19670
AMB_RS19675: AMB_RS19675 - DNA-binding response regulator, at 4,297,962 to 4,298,621
_RS19675
AMB_RS19680: AMB_RS19680 - DUF952 domain-containing protein, at 4,298,808 to 4,299,197
_RS19680
AMB_RS19685: AMB_RS19685 - quinone-dependent dihydroorotate dehydrogenase, at 4,299,200 to 4,300,267
_RS19685
Position (kb) 4298
4299
4300 Strain fitness (log2 ratio) -2
-1
0
1 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.248 kb on + strand, within AMB_RS19675 at 4298.249 kb on - strand, within AMB_RS19675 at 4298.249 kb on - strand, within AMB_RS19675 at 4298.249 kb on - strand, within AMB_RS19675 at 4298.249 kb on - strand, within AMB_RS19675 at 4298.249 kb on - strand, within AMB_RS19675 at 4298.333 kb on + strand, within AMB_RS19675 at 4298.334 kb on - strand, within AMB_RS19675 at 4298.334 kb on - strand, within AMB_RS19675 at 4298.334 kb on - strand, within AMB_RS19675 at 4298.610 kb on - strand at 4298.610 kb on - strand at 4298.651 kb on + strand at 4298.651 kb on + strand at 4298.651 kb on + strand at 4298.651 kb on + strand at 4298.651 kb on + strand at 4298.651 kb on + strand at 4298.651 kb on + strand at 4298.652 kb on - strand at 4298.652 kb on - strand at 4298.652 kb on - strand at 4298.652 kb on - strand at 4298.652 kb on - strand at 4298.652 kb on - strand at 4298.689 kb on + strand at 4298.689 kb on + strand at 4298.690 kb on - strand at 4298.690 kb on - strand at 4298.690 kb on - strand at 4298.794 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.829 kb on + strand at 4298.836 kb on + strand at 4298.836 kb on + strand at 4298.836 kb on + strand at 4298.836 kb on + strand at 4298.836 kb on + strand at 4298.836 kb on + strand at 4298.859 kb on + strand, within AMB_RS19680 at 4298.859 kb on + strand, within AMB_RS19680 at 4298.859 kb on + strand, within AMB_RS19680 at 4298.859 kb on + strand, within AMB_RS19680 at 4298.859 kb on + strand, within AMB_RS19680 at 4298.859 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.878 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.880 kb on + strand, within AMB_RS19680 at 4298.882 kb on + strand, within AMB_RS19680 at 4298.882 kb on + strand, within AMB_RS19680 at 4298.882 kb on + strand, within AMB_RS19680 at 4298.882 kb on + strand, within AMB_RS19680 at 4298.915 kb on + strand, within AMB_RS19680 at 4299.067 kb on + strand, within AMB_RS19680 at 4299.067 kb on + strand, within AMB_RS19680 at 4299.067 kb on + strand, within AMB_RS19680 at 4299.067 kb on + strand, within AMB_RS19680 at 4299.069 kb on + strand, within AMB_RS19680 at 4299.094 kb on + strand, within AMB_RS19680
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 4,298,248 + AMB_RS19675 0.43 +0.1 4,298,248 + AMB_RS19675 0.43 +0.4 4,298,248 + AMB_RS19675 0.43 +0.2 4,298,248 + AMB_RS19675 0.43 +0.2 4,298,248 + AMB_RS19675 0.43 +1.2 4,298,248 + AMB_RS19675 0.43 +0.4 4,298,248 + AMB_RS19675 0.43 +0.3 4,298,249 - AMB_RS19675 0.43 +0.3 4,298,249 - AMB_RS19675 0.43 +0.2 4,298,249 - AMB_RS19675 0.43 +1.0 4,298,249 - AMB_RS19675 0.43 +0.4 4,298,249 - AMB_RS19675 0.43 +0.5 4,298,333 + AMB_RS19675 0.56 -0.0 4,298,334 - AMB_RS19675 0.56 +0.8 4,298,334 - AMB_RS19675 0.56 +0.8 4,298,334 - AMB_RS19675 0.56 +0.1 4,298,610 - +0.1 4,298,610 - +0.1 4,298,651 + +1.0 4,298,651 + +0.3 4,298,651 + +0.4 4,298,651 + -0.4 4,298,651 + +0.3 4,298,651 + +0.4 4,298,651 + +0.4 4,298,652 - -0.2 4,298,652 - -0.2 4,298,652 - +0.1 4,298,652 - -0.5 4,298,652 - +1.5 4,298,652 - +0.4 4,298,689 + +0.3 4,298,689 + +0.5 4,298,690 - -0.1 4,298,690 - +0.0 4,298,690 - +0.6 4,298,794 + -0.0 4,298,829 + +0.3 4,298,829 + -0.1 4,298,829 + -0.3 4,298,829 + +0.2 4,298,829 + +0.2 4,298,829 + -0.2 4,298,829 + +0.2 4,298,829 + +0.3 4,298,836 + -0.8 4,298,836 + -0.6 4,298,836 + +0.2 4,298,836 + -0.7 4,298,836 + -0.1 4,298,836 + +0.2 4,298,859 + AMB_RS19680 0.13 -0.5 4,298,859 + AMB_RS19680 0.13 -1.8 4,298,859 + AMB_RS19680 0.13 -0.4 4,298,859 + AMB_RS19680 0.13 -0.2 4,298,859 + AMB_RS19680 0.13 -0.2 4,298,859 + AMB_RS19680 0.13 +0.4 4,298,878 + AMB_RS19680 0.18 -2.0 4,298,878 + AMB_RS19680 0.18 +0.3 4,298,878 + AMB_RS19680 0.18 -0.5 4,298,878 + AMB_RS19680 0.18 +1.3 4,298,878 + AMB_RS19680 0.18 +0.3 4,298,878 + AMB_RS19680 0.18 +0.1 4,298,878 + AMB_RS19680 0.18 -0.2 4,298,878 + AMB_RS19680 0.18 +0.2 4,298,878 + AMB_RS19680 0.18 -0.4 4,298,880 + AMB_RS19680 0.18 -0.1 4,298,880 + AMB_RS19680 0.18 -0.0 4,298,880 + AMB_RS19680 0.18 +0.3 4,298,880 + AMB_RS19680 0.18 -0.1 4,298,880 + AMB_RS19680 0.18 +0.8 4,298,880 + AMB_RS19680 0.18 -0.3 4,298,880 + AMB_RS19680 0.18 +0.0 4,298,880 + AMB_RS19680 0.18 +0.7 4,298,882 + AMB_RS19680 0.19 +0.0 4,298,882 + AMB_RS19680 0.19 +1.3 4,298,882 + AMB_RS19680 0.19 +0.0 4,298,882 + AMB_RS19680 0.19 -0.1 4,298,915 + AMB_RS19680 0.27 -0.0 4,299,067 + AMB_RS19680 0.66 -0.0 4,299,067 + AMB_RS19680 0.66 -1.3 4,299,067 + AMB_RS19680 0.66 -0.3 4,299,067 + AMB_RS19680 0.66 -1.1 4,299,069 + AMB_RS19680 0.67 -0.4 4,299,094 + AMB_RS19680 0.73 +0.7
Or see this region's nucleotide sequence