Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19065

Experiment: 30_mag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_mag_3
4,139,276	+		AMB_RS23610	0.51	+0.7
4,139,277	-		AMB_RS23610	0.51	+0.1
4,139,277	-		AMB_RS23610	0.51	-0.2
4,139,292	+		AMB_RS23610	0.52	-1.4
4,139,292	+		AMB_RS23610	0.52	-0.5
4,139,293	-		AMB_RS23610	0.52	-0.3
4,139,317	+		AMB_RS23610	0.54	+0.2
4,139,318	-		AMB_RS23610	0.54	-0.1
4,139,556	+		AMB_RS23610	0.72	-0.9
4,139,556	+		AMB_RS23610	0.72	-1.1
4,139,556	+		AMB_RS23610	0.72	+0.3
4,139,557	-		AMB_RS23610	0.72	+0.3
4,139,557	-		AMB_RS23610	0.72	+0.1
4,139,557	-		AMB_RS23610	0.72	-0.7
4,139,750	+		AMB_RS23610	0.86	-0.5
4,139,750	+		AMB_RS23610	0.86	+0.3
4,139,751	-		AMB_RS23610	0.86	+0.3
4,139,766	+		AMB_RS23610	0.87	+0.7
4,139,766	+		AMB_RS23610	0.87	+0.7
4,139,766	+		AMB_RS23610	0.87	-0.0
4,139,767	-		AMB_RS23610	0.87	-0.3
4,139,826	+				+0.8
4,139,827	-				-0.3
4,139,975	+				-1.0
4,139,975	+				+0.2
4,139,976	-				-0.4
4,139,976	-				+2.0
4,139,976	-				+0.5
4,139,978	-				-0.2
4,140,025	-				-1.0
4,140,025	-				-0.3
4,140,025	-				-2.1
4,140,025	-				+0.1
4,140,025	-				+0.9
4,140,089	+				+0.3
4,140,089	+				+0.0
4,140,089	+				+0.9
4,140,089	+				+0.6
4,140,089	+				+0.4
4,140,107	-				-0.5
4,140,123	+				-0.1
4,140,124	-				-0.2
4,140,151	+				-0.5
4,140,151	+				+0.0
4,140,152	-				+1.2
4,140,161	+				+0.2
4,140,161	+				+0.2
4,140,161	+				-1.4
4,140,162	-				+0.6
4,140,165	+				-1.0
4,140,165	+				+0.1
4,140,165	+				+0.0
4,140,166	-				+0.5
4,140,202	-				-0.2
4,140,202	-				-0.7
4,140,217	-				-0.7
4,140,219	+				-1.3
4,140,220	-				-1.3
4,140,312	-				-0.0
4,140,312	-				-1.4
4,140,315	-				+0.2
4,140,340	+				+1.3
4,140,341	-				+0.2
4,140,460	+				+0.4
4,140,727	+		AMB_RS19065	0.13	-1.3
4,140,727	+		AMB_RS19065	0.13	-0.3
4,140,727	+		AMB_RS19065	0.13	-0.0
4,140,727	+		AMB_RS19065	0.13	+0.1
4,140,727	+		AMB_RS19065	0.13	+0.2
4,140,728	-		AMB_RS19065	0.13	-0.3
4,140,728	-		AMB_RS19065	0.13	+0.6
4,140,728	-		AMB_RS19065	0.13	-0.2
4,140,728	-		AMB_RS19065	0.13	-0.7
4,140,728	-		AMB_RS19065	0.13	+0.1
4,140,728	-		AMB_RS19065	0.13	+0.6
4,140,728	-		AMB_RS19065	0.13	-0.5
4,140,808	+		AMB_RS19065	0.16	-0.2
4,140,808	+		AMB_RS19065	0.16	+0.6
4,140,809	-		AMB_RS19065	0.16	-0.6
4,140,836	-		AMB_RS19065	0.16	-0.1
4,140,836	-		AMB_RS19065	0.16	+0.0
4,140,866	+		AMB_RS19065	0.17	-0.4
4,140,867	-		AMB_RS19065	0.17	-0.2
4,140,867	-		AMB_RS19065	0.17	-0.3
4,140,867	-		AMB_RS19065	0.17	+0.1
4,140,867	-		AMB_RS19065	0.17	-1.2
4,140,881	-		AMB_RS19065	0.18	-0.4
4,140,907	+		AMB_RS19065	0.18	-0.2
4,140,964	+		AMB_RS19065	0.20	-0.8
4,140,964	+		AMB_RS19065	0.20	-0.1
4,140,965	-		AMB_RS19065	0.20	-0.0
4,140,965	-		AMB_RS19065	0.20	-0.3
4,141,540	+		AMB_RS19065	0.36	-0.1
4,141,540	+		AMB_RS19065	0.36	-0.3
4,141,541	-		AMB_RS19065	0.36	-0.4
4,141,723	+		AMB_RS19065	0.41	+0.2
4,141,723	+		AMB_RS19065	0.41	-0.4
4,141,857	+		AMB_RS19065	0.44	-0.3
4,141,951	+		AMB_RS19065	0.47	+0.5
4,141,951	+		AMB_RS19065	0.47	-0.5
4,141,951	+		AMB_RS19065	0.47	-0.0
4,141,951	+		AMB_RS19065	0.47	+0.5
4,141,951	+		AMB_RS19065	0.47	-1.1
4,141,951	+		AMB_RS19065	0.47	+0.5
4,141,952	-		AMB_RS19065	0.47	-0.1
4,141,952	-		AMB_RS19065	0.47	+0.1
4,141,952	-		AMB_RS19065	0.47	-0.9
4,141,952	-		AMB_RS19065	0.47	-0.7
4,141,954	-		AMB_RS19065	0.47	+0.3
4,142,014	+		AMB_RS19065	0.49	+0.6
4,142,014	+		AMB_RS19065	0.49	-0.0
4,142,014	+		AMB_RS19065	0.49	-0.8
4,142,014	+		AMB_RS19065	0.49	-0.3
4,142,014	+		AMB_RS19065	0.49	-0.4
4,142,014	+		AMB_RS19065	0.49	-0.0
4,142,014	+		AMB_RS19065	0.49	-1.3
4,142,015	-		AMB_RS19065	0.49	-0.4
4,142,015	-		AMB_RS19065	0.49	-0.0
4,142,033	+		AMB_RS19065	0.49	-0.3
4,142,033	+		AMB_RS19065	0.49	-1.5
4,142,034	-		AMB_RS19065	0.49	+0.3
4,142,034	-		AMB_RS19065	0.49	-1.4
4,142,034	-		AMB_RS19065	0.49	-0.6
4,142,167	+		AMB_RS19065	0.53	-1.9
4,142,167	+		AMB_RS19065	0.53	+0.1
4,142,240	-		AMB_RS19065	0.55	-0.0
4,142,301	+		AMB_RS19065	0.56	-0.4
4,142,301	+		AMB_RS19065	0.56	-0.4
4,142,301	+		AMB_RS19065	0.56	-1.0
4,142,302	-		AMB_RS19065	0.56	-0.2
4,142,302	-		AMB_RS19065	0.56	-0.8
4,142,747	-		AMB_RS19065	0.69	-1.4
4,143,041	+		AMB_RS19065	0.77	-0.4
4,143,041	+		AMB_RS19065	0.77	-0.2
4,143,041	+		AMB_RS19065	0.77	+0.4
4,143,042	-		AMB_RS19065	0.77	-0.7
4,143,042	-		AMB_RS19065	0.77	+0.0
4,143,217	+		AMB_RS19065	0.82	+0.1
4,143,217	+		AMB_RS19065	0.82	-0.5
4,143,217	+		AMB_RS19065	0.82	-1.6
4,143,218	-		AMB_RS19065	0.82	-1.1
4,143,218	-		AMB_RS19065	0.82	+0.2
4,143,218	-		AMB_RS19065	0.82	+0.5
4,143,347	+		AMB_RS19065	0.85	-0.5
4,143,347	+		AMB_RS19065	0.85	-0.3
4,143,347	+		AMB_RS19065	0.85	+0.6
4,143,348	-		AMB_RS19065	0.85	-0.2
4,143,479	+		AMB_RS19065	0.89	-0.8
4,143,480	-		AMB_RS19065	0.89	-0.2
4,143,480	-		AMB_RS19065	0.89	-0.9
4,143,857	+				+1.3
4,143,857	+				-0.8
4,143,857	+				-0.1
4,143,857	+				-0.2
4,143,858	-				+0.3
4,143,867	+				-0.3
4,143,868	-				-0.3
4,143,868	-				-0.8
4,143,903	+				-0.3
4,143,903	+				-0.6
4,143,903	+				-0.9
4,143,935	+				-0.7
4,143,935	+				-0.5
4,143,935	+				-0.6
4,143,935	+				-0.5
4,143,935	+				-0.2
4,143,935	+				-0.5
4,143,936	-				+0.2
4,143,936	-				+2.5
4,143,936	-				+0.1
4,143,936	-				-0.7
4,143,936	-				-0.1
4,143,937	+				-0.9
4,143,937	+				+0.4
4,144,026	+				+0.0
4,144,040	-				-0.4
4,144,083	+				-0.6
4,144,083	+				-1.0
4,144,125	-				-0.6
4,144,181	+				+0.4
4,144,182	-				-0.3
4,144,401	+				-1.1
4,144,402	-				+0.4
4,144,404	-				+0.3
4,144,447	+				+0.1
4,144,447	+				+1.1
4,144,447	+				+0.7
4,144,456	+				-1.2
4,144,456	+				-0.5
4,144,456	+				+0.2
4,144,456	+				-1.0
4,144,456	+				-2.0
4,144,457	-				-0.8
4,144,457	-				-0.1
4,144,457	-				-0.9
4,144,457	-				-0.1
4,144,457	-				-0.8
4,144,466	+				-0.6
4,144,623	+				-0.0
4,144,623	+				-0.8
4,144,624	-				+0.1
4,144,624	-				-0.4
4,144,624	-				+0.5
4,144,624	-				-1.3
4,144,641	+				-0.5
4,144,641	+				-0.2
4,144,641	+				-1.2
4,144,641	+				+0.4
4,144,645	+				-0.8
4,144,645	+				+0.3
4,144,646	-				-2.6
4,144,646	-				-0.4
4,144,646	-				-0.5
4,144,649	-				+3.3
4,144,649	-				+0.5
4,144,649	-				+0.2
4,144,653	-				+0.4
4,144,653	-				-0.4
4,144,653	-				-0.6
4,144,693	-		AMB_RS19070	0.11	-0.1
4,144,751	+		AMB_RS19070	0.15	-0.9
4,144,751	+		AMB_RS19070	0.15	+1.0
4,144,752	-		AMB_RS19070	0.15	-0.3
4,144,752	-		AMB_RS19070	0.15	+1.1
4,144,752	-		AMB_RS19070	0.15	+0.6
4,144,752	-		AMB_RS19070	0.15	+0.2
4,144,755	+		AMB_RS19070	0.16	+0.1
4,144,755	+		AMB_RS19070	0.16	+1.1
4,144,755	+		AMB_RS19070	0.16	-1.0
4,144,755	+		AMB_RS19070	0.16	-0.6
4,144,758	-		AMB_RS19070	0.16	-0.3
4,144,772	+		AMB_RS19070	0.17	+0.3
4,144,858	+		AMB_RS19070	0.23	-0.1
4,144,858	+		AMB_RS19070	0.23	+0.2
4,144,858	+		AMB_RS19070	0.23	+2.1
4,144,858	+		AMB_RS19070	0.23	-0.4
4,144,859	-		AMB_RS19070	0.23	-1.0
4,144,859	-		AMB_RS19070	0.23	+0.1
4,144,859	-		AMB_RS19070	0.23	+2.2
4,144,859	-		AMB_RS19070	0.23	-0.6