Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18795

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS18790 and AMB_RS18795 are separated by 203 nucleotidesAMB_RS18795 and AMB_RS18800 are separated by 83 nucleotides AMB_RS18790: AMB_RS18790 - threonylcarbamoyl-AMP synthase, at 4,079,366 to 4,080,337 _RS18790 AMB_RS18795: AMB_RS18795 - FAD-binding oxidoreductase, at 4,080,541 to 4,081,950 _RS18795 AMB_RS18800: AMB_RS18800 - LPS export ABC transporter permease LptF, at 4,082,034 to 4,083,140 _RS18800 Position (kb) 4080 4081 4082Strain fitness (log2 ratio) -3 -2 -1 0 1at 4080.640 kb on + strandat 4080.640 kb on + strandat 4081.006 kb on + strand, within AMB_RS18795at 4081.007 kb on - strand, within AMB_RS18795at 4081.852 kb on + strandat 4081.853 kb on - strandat 4081.853 kb on - strandat 4081.953 kb on + strandat 4081.993 kb on + strandat 4082.031 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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4,080,640 + -3.3
4,080,640 + +1.3
4,081,006 + AMB_RS18795 0.33 -1.1
4,081,007 - AMB_RS18795 0.33 -1.7
4,081,852 + -1.3
4,081,853 - -3.1
4,081,853 - -1.6
4,081,953 + -0.3
4,081,993 + -0.6
4,082,031 + -0.7

Or see this region's nucleotide sequence