Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16220

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16210 and AMB_RS16215 are separated by 116 nucleotidesAMB_RS16215 and AMB_RS16220 are separated by 167 nucleotidesAMB_RS16220 and AMB_RS16225 overlap by 4 nucleotidesAMB_RS16225 and AMB_RS16230 are separated by 9 nucleotides AMB_RS16210: AMB_RS16210 - peptidoglycan-associated lipoprotein Pal, at 3,477,339 to 3,477,827 _RS16210 AMB_RS16215: AMB_RS16215 - peptidoglycan-associated lipoprotein Pal, at 3,477,944 to 3,478,429 _RS16215 AMB_RS16220: AMB_RS16220 - protein TolB, at 3,478,597 to 3,479,940 _RS16220 AMB_RS16225: AMB_RS16225 - energy transducer TonB, at 3,479,937 to 3,480,878 _RS16225 AMB_RS16230: AMB_RS16230 - protein TolR, at 3,480,888 to 3,481,349 _RS16230 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -2 -1 0 1at 3477.668 kb on + strand, within AMB_RS16210at 3477.700 kb on + strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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3,477,668 + AMB_RS16210 0.67 -2.3
3,477,700 + AMB_RS16210 0.74 -1.3
3,477,701 - AMB_RS16210 0.74 -0.6
3,477,701 - AMB_RS16210 0.74 -0.3
3,477,701 - AMB_RS16210 0.74 -0.1
3,477,701 - AMB_RS16210 0.74 -1.1
3,477,810 - -2.0

Or see this region's nucleotide sequence