Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11500

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11495 and AMB_RS11500 are separated by 125 nucleotidesAMB_RS11500 and AMB_RS11505 are separated by 171 nucleotides AMB_RS11495: AMB_RS11495 - hypothetical protein, at 2,472,919 to 2,473,850 _RS11495 AMB_RS11500: AMB_RS11500 - XRE family transcriptional regulator, at 2,473,976 to 2,474,443 _RS11500 AMB_RS11505: AMB_RS11505 - helix-turn-helix domain-containing protein, at 2,474,615 to 2,475,517 _RS11505 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -2 -1 0 1at 2473.050 kb on + strand, within AMB_RS11495at 2473.050 kb on + strand, within AMB_RS11495at 2473.050 kb on + strand, within AMB_RS11495at 2473.050 kb on + strand, within AMB_RS11495at 2473.050 kb on + strand, within AMB_RS11495at 2473.051 kb on - strand, within AMB_RS11495at 2473.051 kb on - strand, within AMB_RS11495at 2473.089 kb on + strand, within AMB_RS11495at 2473.090 kb on - strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.245 kb on + strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.246 kb on - strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.247 kb on + strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.248 kb on - strand, within AMB_RS11495at 2473.376 kb on + strand, within AMB_RS11495at 2473.376 kb on + strand, within AMB_RS11495at 2473.376 kb on + strand, within AMB_RS11495at 2473.377 kb on - strand, within AMB_RS11495at 2473.377 kb on - strand, within AMB_RS11495at 2473.377 kb on - strand, within AMB_RS11495at 2473.377 kb on - strand, within AMB_RS11495at 2473.529 kb on + strand, within AMB_RS11495at 2473.529 kb on + strand, within AMB_RS11495at 2473.529 kb on + strand, within AMB_RS11495at 2473.539 kb on + strand, within AMB_RS11495at 2473.539 kb on + strand, within AMB_RS11495at 2473.539 kb on + strand, within AMB_RS11495at 2473.539 kb on + strand, within AMB_RS11495at 2473.539 kb on + strand, within AMB_RS11495at 2473.539 kb on + strand, within AMB_RS11495at 2473.540 kb on - strand, within AMB_RS11495at 2473.540 kb on - strand, within AMB_RS11495at 2473.540 kb on - strand, within AMB_RS11495at 2473.540 kb on - strand, within AMB_RS11495at 2473.619 kb on + strand, within AMB_RS11495at 2473.619 kb on + strand, within AMB_RS11495at 2473.677 kb on + strand, within AMB_RS11495at 2473.678 kb on - strand, within AMB_RS11495at 2473.766 kb on + strandat 2473.766 kb on + strandat 2473.766 kb on + strandat 2473.766 kb on + strandat 2473.767 kb on - strandat 2473.767 kb on - strandat 2473.797 kb on + strandat 2473.797 kb on + strandat 2473.797 kb on + strandat 2473.797 kb on + strandat 2473.797 kb on + strandat 2473.797 kb on + strandat 2473.797 kb on + strandat 2473.798 kb on - strandat 2473.798 kb on - strandat 2473.798 kb on - strandat 2473.798 kb on - strandat 2473.798 kb on - strandat 2473.798 kb on - strandat 2473.836 kb on + strandat 2473.837 kb on - strandat 2473.844 kb on + strandat 2473.845 kb on - strandat 2473.845 kb on - strandat 2473.888 kb on + strandat 2473.889 kb on - strandat 2473.900 kb on + strandat 2473.902 kb on - strandat 2473.992 kb on + strandat 2473.992 kb on + strandat 2474.142 kb on - strand, within AMB_RS11500at 2474.216 kb on + strand, within AMB_RS11500at 2474.216 kb on + strand, within AMB_RS11500at 2474.360 kb on + strand, within AMB_RS11500at 2474.363 kb on + strand, within AMB_RS11500at 2474.441 kb on + strandat 2474.442 kb on - strandat 2474.469 kb on + strandat 2474.470 kb on - strandat 2474.470 kb on - strandat 2474.505 kb on + strandat 2474.505 kb on + strandat 2474.506 kb on - strandat 2474.507 kb on + strandat 2474.507 kb on + strandat 2474.507 kb on + strandat 2474.507 kb on + strandat 2474.507 kb on + strandat 2474.508 kb on - strandat 2474.508 kb on - strandat 2474.508 kb on - strandat 2474.508 kb on - strandat 2474.670 kb on - strandat 2474.696 kb on + strandat 2474.839 kb on - strand, within AMB_RS11505at 2474.999 kb on + strand, within AMB_RS11505at 2474.999 kb on + strand, within AMB_RS11505at 2474.999 kb on + strand, within AMB_RS11505at 2475.000 kb on - strand, within AMB_RS11505at 2475.000 kb on - strand, within AMB_RS11505at 2475.000 kb on - strand, within AMB_RS11505at 2475.108 kb on + strand, within AMB_RS11505at 2475.108 kb on + strand, within AMB_RS11505at 2475.109 kb on - strand, within AMB_RS11505at 2475.151 kb on - strand, within AMB_RS11505at 2475.395 kb on + strand, within AMB_RS11505at 2475.396 kb on - strand, within AMB_RS11505at 2475.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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2,473,050 + AMB_RS11495 0.14 -0.3
2,473,050 + AMB_RS11495 0.14 +0.1
2,473,050 + AMB_RS11495 0.14 +0.1
2,473,050 + AMB_RS11495 0.14 +0.1
2,473,050 + AMB_RS11495 0.14 +0.2
2,473,051 - AMB_RS11495 0.14 +0.3
2,473,051 - AMB_RS11495 0.14 -1.3
2,473,089 + AMB_RS11495 0.18 -0.6
2,473,090 - AMB_RS11495 0.18 +0.4
2,473,245 + AMB_RS11495 0.35 -0.2
2,473,245 + AMB_RS11495 0.35 +0.4
2,473,245 + AMB_RS11495 0.35 +1.0
2,473,245 + AMB_RS11495 0.35 -1.3
2,473,245 + AMB_RS11495 0.35 +0.9
2,473,245 + AMB_RS11495 0.35 +0.0
2,473,245 + AMB_RS11495 0.35 +0.8
2,473,245 + AMB_RS11495 0.35 +0.0
2,473,245 + AMB_RS11495 0.35 -0.3
2,473,245 + AMB_RS11495 0.35 -0.0
2,473,245 + AMB_RS11495 0.35 -0.4
2,473,245 + AMB_RS11495 0.35 -0.2
2,473,245 + AMB_RS11495 0.35 +0.3
2,473,245 + AMB_RS11495 0.35 -0.5
2,473,245 + AMB_RS11495 0.35 +1.3
2,473,245 + AMB_RS11495 0.35 -0.2
2,473,245 + AMB_RS11495 0.35 +0.5
2,473,245 + AMB_RS11495 0.35 +1.3
2,473,246 - AMB_RS11495 0.35 -0.1
2,473,246 - AMB_RS11495 0.35 -0.3
2,473,246 - AMB_RS11495 0.35 +0.1
2,473,246 - AMB_RS11495 0.35 +0.3
2,473,246 - AMB_RS11495 0.35 +0.3
2,473,246 - AMB_RS11495 0.35 +0.2
2,473,246 - AMB_RS11495 0.35 +0.1
2,473,246 - AMB_RS11495 0.35 -0.3
2,473,247 + AMB_RS11495 0.35 +0.1
2,473,247 + AMB_RS11495 0.35 -0.3
2,473,247 + AMB_RS11495 0.35 +0.0
2,473,247 + AMB_RS11495 0.35 -0.9
2,473,247 + AMB_RS11495 0.35 -1.9
2,473,247 + AMB_RS11495 0.35 -0.2
2,473,247 + AMB_RS11495 0.35 +0.5
2,473,248 - AMB_RS11495 0.35 +0.5
2,473,248 - AMB_RS11495 0.35 +1.6
2,473,248 - AMB_RS11495 0.35 +0.8
2,473,248 - AMB_RS11495 0.35 +0.8
2,473,248 - AMB_RS11495 0.35 +0.5
2,473,248 - AMB_RS11495 0.35 -1.2
2,473,248 - AMB_RS11495 0.35 -2.0
2,473,376 + AMB_RS11495 0.49 -0.4
2,473,376 + AMB_RS11495 0.49 -0.3
2,473,376 + AMB_RS11495 0.49 -0.1
2,473,377 - AMB_RS11495 0.49 +0.7
2,473,377 - AMB_RS11495 0.49 +0.7
2,473,377 - AMB_RS11495 0.49 -0.3
2,473,377 - AMB_RS11495 0.49 +0.1
2,473,529 + AMB_RS11495 0.65 +0.2
2,473,529 + AMB_RS11495 0.65 -0.5
2,473,529 + AMB_RS11495 0.65 +0.2
2,473,539 + AMB_RS11495 0.67 -0.3
2,473,539 + AMB_RS11495 0.67 +0.3
2,473,539 + AMB_RS11495 0.67 +0.1
2,473,539 + AMB_RS11495 0.67 -0.3
2,473,539 + AMB_RS11495 0.67 -0.3
2,473,539 + AMB_RS11495 0.67 +1.6
2,473,540 - AMB_RS11495 0.67 +0.6
2,473,540 - AMB_RS11495 0.67 +0.1
2,473,540 - AMB_RS11495 0.67 -0.5
2,473,540 - AMB_RS11495 0.67 -0.1
2,473,619 + AMB_RS11495 0.75 -0.3
2,473,619 + AMB_RS11495 0.75 -0.0
2,473,677 + AMB_RS11495 0.81 -0.0
2,473,678 - AMB_RS11495 0.81 +1.1
2,473,766 + -0.1
2,473,766 + +0.3
2,473,766 + +0.0
2,473,766 + -0.1
2,473,767 - -0.3
2,473,767 - -0.1
2,473,797 + -0.0
2,473,797 + +1.3
2,473,797 + +0.3
2,473,797 + +0.1
2,473,797 + +0.2
2,473,797 + +0.2
2,473,797 + -1.5
2,473,798 - -0.0
2,473,798 - -1.0
2,473,798 - -0.2
2,473,798 - +1.3
2,473,798 - +0.1
2,473,798 - +0.5
2,473,836 + +0.1
2,473,837 - +0.2
2,473,844 + -0.1
2,473,845 - -0.0
2,473,845 - -1.2
2,473,888 + -0.0
2,473,889 - +0.5
2,473,900 + +0.1
2,473,902 - +0.5
2,473,992 + +0.7
2,473,992 + -0.3
2,474,142 - AMB_RS11500 0.35 -0.1
2,474,216 + AMB_RS11500 0.51 -1.5
2,474,216 + AMB_RS11500 0.51 +0.6
2,474,360 + AMB_RS11500 0.82 -1.0
2,474,363 + AMB_RS11500 0.83 -0.8
2,474,441 + -0.9
2,474,442 - -0.2
2,474,469 + -0.1
2,474,470 - -0.7
2,474,470 - -0.5
2,474,505 + +0.5
2,474,505 + -0.1
2,474,506 - -0.9
2,474,507 + +0.5
2,474,507 + -0.3
2,474,507 + -1.1
2,474,507 + -0.4
2,474,507 + -0.1
2,474,508 - +0.5
2,474,508 - -1.3
2,474,508 - +0.3
2,474,508 - +0.3
2,474,670 - -1.6
2,474,696 + -2.7
2,474,839 - AMB_RS11505 0.25 -0.4
2,474,999 + AMB_RS11505 0.43 -0.1
2,474,999 + AMB_RS11505 0.43 +0.1
2,474,999 + AMB_RS11505 0.43 +1.2
2,475,000 - AMB_RS11505 0.43 -2.0
2,475,000 - AMB_RS11505 0.43 -0.2
2,475,000 - AMB_RS11505 0.43 -0.3
2,475,108 + AMB_RS11505 0.55 -0.0
2,475,108 + AMB_RS11505 0.55 +0.0
2,475,109 - AMB_RS11505 0.55 -0.9
2,475,151 - AMB_RS11505 0.59 -0.3
2,475,395 + AMB_RS11505 0.86 -0.5
2,475,396 - AMB_RS11505 0.86 -0.2
2,475,430 + -0.4

Or see this region's nucleotide sequence