Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09110

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09100 and AMB_RS24350 are separated by 10 nucleotidesAMB_RS24350 and AMB_RS09110 overlap by 21 nucleotidesAMB_RS09110 and AMB_RS09115 are separated by 127 nucleotidesAMB_RS09115 and AMB_RS09120 overlap by 4 nucleotides AMB_RS09100: AMB_RS09100 - hypothetical protein, at 1,937,430 to 1,938,800 _RS09100 AMB_RS24350: AMB_RS24350 - hypothetical protein, at 1,938,811 to 1,939,101 _RS24350 AMB_RS09110: AMB_RS09110 - diguanylate cyclase response regulator, at 1,939,081 to 1,940,949 _RS09110 AMB_RS09115: AMB_RS09115 - hypothetical protein, at 1,941,077 to 1,941,403 _RS09115 AMB_RS09120: AMB_RS09120 - ABC transporter ATP-binding protein, at 1,941,400 to 1,942,113 _RS09120 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1938.173 kb on + strand, within AMB_RS09100at 1938.173 kb on + strand, within AMB_RS09100at 1938.173 kb on + strand, within AMB_RS09100at 1938.174 kb on - strand, within AMB_RS09100at 1938.174 kb on - strand, within AMB_RS09100at 1938.397 kb on + strand, within AMB_RS09100at 1938.398 kb on - strand, within AMB_RS09100at 1938.412 kb on + strand, within AMB_RS09100at 1938.413 kb on - strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.416 kb on - strand, within AMB_RS09100at 1938.416 kb on - strand, within AMB_RS09100at 1938.416 kb on - strand, within AMB_RS09100at 1938.418 kb on + strand, within AMB_RS09100at 1938.419 kb on - strand, within AMB_RS09100at 1938.419 kb on - strand, within AMB_RS09100at 1938.419 kb on - strand, within AMB_RS09100at 1938.436 kb on + strand, within AMB_RS09100at 1938.514 kb on + strand, within AMB_RS09100at 1938.514 kb on + strand, within AMB_RS09100at 1938.515 kb on - strand, within AMB_RS09100at 1938.515 kb on - strand, within AMB_RS09100at 1938.515 kb on - strand, within AMB_RS09100at 1938.688 kb on + strandat 1938.689 kb on - strandat 1938.689 kb on - strandat 1938.812 kb on + strandat 1938.819 kb on - strandat 1938.855 kb on - strand, within AMB_RS24350at 1938.917 kb on + strand, within AMB_RS24350at 1938.917 kb on + strand, within AMB_RS24350at 1938.917 kb on + strand, within AMB_RS24350at 1938.918 kb on - strand, within AMB_RS24350at 1939.341 kb on + strand, within AMB_RS09110at 1939.341 kb on + strand, within AMB_RS09110at 1939.341 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.344 kb on - strand, within AMB_RS09110at 1939.452 kb on + strand, within AMB_RS09110at 1939.457 kb on + strand, within AMB_RS09110at 1939.457 kb on + strand, within AMB_RS09110at 1939.480 kb on - strand, within AMB_RS09110at 1939.480 kb on - strand, within AMB_RS09110at 1939.506 kb on + strand, within AMB_RS09110at 1939.506 kb on + strand, within AMB_RS09110at 1939.551 kb on + strand, within AMB_RS09110at 1939.551 kb on + strand, within AMB_RS09110at 1939.559 kb on + strand, within AMB_RS09110at 1939.559 kb on + strand, within AMB_RS09110at 1939.560 kb on - strand, within AMB_RS09110at 1939.560 kb on - strand, within AMB_RS09110at 1939.763 kb on - strand, within AMB_RS09110at 1939.921 kb on + strand, within AMB_RS09110at 1939.921 kb on + strand, within AMB_RS09110at 1939.921 kb on + strand, within AMB_RS09110at 1939.922 kb on - strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.080 kb on + strand, within AMB_RS09110at 1940.081 kb on - strand, within AMB_RS09110at 1940.081 kb on - strand, within AMB_RS09110at 1940.081 kb on - strand, within AMB_RS09110at 1940.081 kb on - strand, within AMB_RS09110at 1940.081 kb on - strand, within AMB_RS09110at 1940.081 kb on - strand, within AMB_RS09110at 1940.084 kb on - strand, within AMB_RS09110at 1940.279 kb on + strand, within AMB_RS09110at 1940.280 kb on - strand, within AMB_RS09110at 1941.001 kb on - strandat 1941.078 kb on + strandat 1941.078 kb on + strandat 1941.078 kb on + strandat 1941.078 kb on + strandat 1941.079 kb on - strandat 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.115 kb on - strand, within AMB_RS09115at 1941.115 kb on - strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.286 kb on - strand, within AMB_RS09115at 1941.286 kb on - strand, within AMB_RS09115at 1941.423 kb on - strandat 1941.423 kb on - strandat 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.501 kb on - strand, within AMB_RS09120

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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1,938,173 + AMB_RS09100 0.54 +0.3
1,938,173 + AMB_RS09100 0.54 +0.1
1,938,173 + AMB_RS09100 0.54 +0.1
1,938,174 - AMB_RS09100 0.54 +0.2
1,938,174 - AMB_RS09100 0.54 +0.2
1,938,397 + AMB_RS09100 0.71 +0.2
1,938,398 - AMB_RS09100 0.71 -1.1
1,938,412 + AMB_RS09100 0.72 +0.3
1,938,413 - AMB_RS09100 0.72 -3.3
1,938,415 + AMB_RS09100 0.72 -0.9
1,938,415 + AMB_RS09100 0.72 -0.4
1,938,415 + AMB_RS09100 0.72 -0.3
1,938,415 + AMB_RS09100 0.72 +0.3
1,938,415 + AMB_RS09100 0.72 +1.1
1,938,415 + AMB_RS09100 0.72 -0.9
1,938,416 - AMB_RS09100 0.72 -0.2
1,938,416 - AMB_RS09100 0.72 -0.7
1,938,416 - AMB_RS09100 0.72 -1.4
1,938,418 + AMB_RS09100 0.72 -1.8
1,938,419 - AMB_RS09100 0.72 -0.6
1,938,419 - AMB_RS09100 0.72 +0.0
1,938,419 - AMB_RS09100 0.72 +0.2
1,938,436 + AMB_RS09100 0.73 +0.7
1,938,514 + AMB_RS09100 0.79 -0.3
1,938,514 + AMB_RS09100 0.79 -0.1
1,938,515 - AMB_RS09100 0.79 -0.4
1,938,515 - AMB_RS09100 0.79 -0.1
1,938,515 - AMB_RS09100 0.79 -0.8
1,938,688 + -0.3
1,938,689 - +0.3
1,938,689 - -0.2
1,938,812 + -0.5
1,938,819 - -0.8
1,938,855 - AMB_RS24350 0.15 -2.5
1,938,917 + AMB_RS24350 0.36 -0.3
1,938,917 + AMB_RS24350 0.36 -0.0
1,938,917 + AMB_RS24350 0.36 +0.3
1,938,918 - AMB_RS24350 0.37 -0.2
1,939,341 + AMB_RS09110 0.14 -0.1
1,939,341 + AMB_RS09110 0.14 +0.2
1,939,341 + AMB_RS09110 0.14 -2.5
1,939,343 + AMB_RS09110 0.14 +0.2
1,939,343 + AMB_RS09110 0.14 -0.2
1,939,343 + AMB_RS09110 0.14 -1.0
1,939,343 + AMB_RS09110 0.14 -1.1
1,939,343 + AMB_RS09110 0.14 -0.2
1,939,344 - AMB_RS09110 0.14 -0.4
1,939,452 + AMB_RS09110 0.20 -0.2
1,939,457 + AMB_RS09110 0.20 -0.3
1,939,457 + AMB_RS09110 0.20 -1.0
1,939,480 - AMB_RS09110 0.21 -0.4
1,939,480 - AMB_RS09110 0.21 -0.6
1,939,506 + AMB_RS09110 0.23 +0.4
1,939,506 + AMB_RS09110 0.23 +1.1
1,939,551 + AMB_RS09110 0.25 -1.5
1,939,551 + AMB_RS09110 0.25 +0.6
1,939,559 + AMB_RS09110 0.26 +0.1
1,939,559 + AMB_RS09110 0.26 +0.5
1,939,560 - AMB_RS09110 0.26 -0.1
1,939,560 - AMB_RS09110 0.26 +0.3
1,939,763 - AMB_RS09110 0.36 +0.7
1,939,921 + AMB_RS09110 0.45 -0.4
1,939,921 + AMB_RS09110 0.45 -1.0
1,939,921 + AMB_RS09110 0.45 +1.9
1,939,922 - AMB_RS09110 0.45 +0.3
1,940,080 + AMB_RS09110 0.53 -0.6
1,940,080 + AMB_RS09110 0.53 -1.3
1,940,080 + AMB_RS09110 0.53 -0.5
1,940,080 + AMB_RS09110 0.53 -0.0
1,940,080 + AMB_RS09110 0.53 +0.0
1,940,080 + AMB_RS09110 0.53 +0.6
1,940,080 + AMB_RS09110 0.53 -0.2
1,940,080 + AMB_RS09110 0.53 +0.4
1,940,081 - AMB_RS09110 0.54 -0.2
1,940,081 - AMB_RS09110 0.54 -0.9
1,940,081 - AMB_RS09110 0.54 -0.2
1,940,081 - AMB_RS09110 0.54 -0.9
1,940,081 - AMB_RS09110 0.54 -2.4
1,940,081 - AMB_RS09110 0.54 -1.2
1,940,084 - AMB_RS09110 0.54 -0.7
1,940,279 + AMB_RS09110 0.64 +0.2
1,940,280 - AMB_RS09110 0.64 -0.4
1,941,001 - -0.7
1,941,078 + -0.1
1,941,078 + +0.0
1,941,078 + -0.8
1,941,078 + -2.3
1,941,079 - +0.4
1,941,114 + AMB_RS09115 0.11 -0.9
1,941,114 + AMB_RS09115 0.11 +0.2
1,941,114 + AMB_RS09115 0.11 -0.3
1,941,114 + AMB_RS09115 0.11 +1.1
1,941,114 + AMB_RS09115 0.11 -0.7
1,941,114 + AMB_RS09115 0.11 -0.1
1,941,115 - AMB_RS09115 0.12 -0.3
1,941,115 - AMB_RS09115 0.12 +0.3
1,941,285 + AMB_RS09115 0.64 +0.1
1,941,285 + AMB_RS09115 0.64 -0.0
1,941,285 + AMB_RS09115 0.64 +0.3
1,941,286 - AMB_RS09115 0.64 -2.1
1,941,286 - AMB_RS09115 0.64 +1.1
1,941,423 - -0.7
1,941,423 - +0.3
1,941,500 + AMB_RS09120 0.14 +0.6
1,941,500 + AMB_RS09120 0.14 +0.0
1,941,500 + AMB_RS09120 0.14 -0.5
1,941,500 + AMB_RS09120 0.14 -0.5
1,941,501 - AMB_RS09120 0.14 +0.6

Or see this region's nucleotide sequence