Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04650

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04645 and AMB_RS04650 are separated by 245 nucleotidesAMB_RS04650 and AMB_RS04655 are separated by 0 nucleotidesAMB_RS04655 and AMB_RS04660 are separated by 13 nucleotides AMB_RS04645: AMB_RS04645 - ATP-dependent helicase, at 972,086 to 974,710 _RS04645 AMB_RS04650: AMB_RS04650 - hypothetical protein, at 974,956 to 975,345 _RS04650 AMB_RS04655: AMB_RS04655 - hypothetical protein, at 975,346 to 975,783 _RS04655 AMB_RS04660: AMB_RS04660 - VWA domain-containing protein, at 975,797 to 977,311 _RS04660 Position (kb) 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2at 974.051 kb on - strand, within AMB_RS04645at 974.484 kb on + strandat 974.560 kb on + strandat 974.561 kb on - strandat 974.587 kb on + strandat 974.588 kb on - strandat 974.632 kb on + strandat 974.632 kb on + strandat 974.675 kb on + strandat 974.675 kb on + strandat 974.675 kb on + strandat 974.726 kb on - strandat 974.726 kb on - strandat 974.726 kb on - strandat 974.835 kb on + strandat 974.836 kb on - strandat 974.836 kb on - strandat 974.836 kb on - strandat 974.876 kb on + strandat 974.891 kb on + strandat 974.891 kb on + strandat 974.892 kb on - strandat 974.892 kb on - strandat 974.938 kb on - strandat 975.047 kb on + strand, within AMB_RS04650at 975.145 kb on - strand, within AMB_RS04650at 975.264 kb on + strand, within AMB_RS04650at 975.357 kb on - strandat 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.607 kb on + strand, within AMB_RS04655at 975.608 kb on - strand, within AMB_RS04655at 975.682 kb on + strand, within AMB_RS04655at 975.781 kb on + strandat 975.889 kb on + strandat 975.889 kb on + strandat 975.889 kb on + strandat 975.889 kb on + strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.961 kb on + strand, within AMB_RS04660at 975.962 kb on - strand, within AMB_RS04660at 975.962 kb on - strand, within AMB_RS04660at 975.962 kb on - strand, within AMB_RS04660at 975.989 kb on + strand, within AMB_RS04660at 975.989 kb on + strand, within AMB_RS04660at 975.989 kb on + strand, within AMB_RS04660at 975.990 kb on - strand, within AMB_RS04660at 975.990 kb on - strand, within AMB_RS04660at 975.990 kb on - strand, within AMB_RS04660at 975.991 kb on + strand, within AMB_RS04660at 975.992 kb on - strand, within AMB_RS04660at 976.025 kb on + strand, within AMB_RS04660at 976.026 kb on - strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.183 kb on + strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.184 kb on - strand, within AMB_RS04660at 976.185 kb on + strand, within AMB_RS04660at 976.186 kb on - strand, within AMB_RS04660at 976.186 kb on - strand, within AMB_RS04660at 976.226 kb on + strand, within AMB_RS04660at 976.226 kb on + strand, within AMB_RS04660at 976.227 kb on - strand, within AMB_RS04660at 976.259 kb on + strand, within AMB_RS04660at 976.280 kb on + strand, within AMB_RS04660at 976.310 kb on - strand, within AMB_RS04660at 976.343 kb on + strand, within AMB_RS04660at 976.343 kb on + strand, within AMB_RS04660at 976.344 kb on - strand, within AMB_RS04660

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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974,051 - AMB_RS04645 0.75 +0.0
974,484 + -0.4
974,560 + +0.1
974,561 - -0.7
974,587 + -0.3
974,588 - -0.9
974,632 + +0.5
974,632 + -1.4
974,675 + -0.5
974,675 + +0.0
974,675 + -0.1
974,726 - -0.4
974,726 - -0.5
974,726 - +0.3
974,835 + -2.5
974,836 - -0.1
974,836 - -0.4
974,836 - -0.6
974,876 + -0.3
974,891 + +0.2
974,891 + +0.9
974,892 - +0.1
974,892 - +0.3
974,938 - -1.0
975,047 + AMB_RS04650 0.23 -1.5
975,145 - AMB_RS04650 0.48 -1.1
975,264 + AMB_RS04650 0.79 -0.6
975,357 - -0.2
975,607 + AMB_RS04655 0.60 -0.7
975,607 + AMB_RS04655 0.60 +0.9
975,607 + AMB_RS04655 0.60 -1.2
975,607 + AMB_RS04655 0.60 +0.0
975,607 + AMB_RS04655 0.60 +0.2
975,607 + AMB_RS04655 0.60 -1.7
975,607 + AMB_RS04655 0.60 +1.2
975,608 - AMB_RS04655 0.60 +0.3
975,682 + AMB_RS04655 0.77 +0.3
975,781 + -0.1
975,889 + +0.1
975,889 + -0.8
975,889 + -0.0
975,889 + -0.7
975,890 - -0.5
975,890 - -0.2
975,890 - -2.0
975,890 - +0.1
975,890 - +0.3
975,961 + AMB_RS04660 0.11 -0.4
975,962 - AMB_RS04660 0.11 +0.5
975,962 - AMB_RS04660 0.11 -0.2
975,962 - AMB_RS04660 0.11 -1.5
975,989 + AMB_RS04660 0.13 -0.1
975,989 + AMB_RS04660 0.13 -2.2
975,989 + AMB_RS04660 0.13 -0.6
975,990 - AMB_RS04660 0.13 +2.3
975,990 - AMB_RS04660 0.13 -0.2
975,990 - AMB_RS04660 0.13 -1.2
975,991 + AMB_RS04660 0.13 -0.3
975,992 - AMB_RS04660 0.13 +0.1
976,025 + AMB_RS04660 0.15 -0.6
976,026 - AMB_RS04660 0.15 -1.0
976,183 + AMB_RS04660 0.25 +0.2
976,183 + AMB_RS04660 0.25 -0.2
976,183 + AMB_RS04660 0.25 +0.3
976,183 + AMB_RS04660 0.25 -0.1
976,184 - AMB_RS04660 0.26 -0.5
976,184 - AMB_RS04660 0.26 -0.4
976,184 - AMB_RS04660 0.26 +1.5
976,184 - AMB_RS04660 0.26 -0.2
976,185 + AMB_RS04660 0.26 +0.3
976,186 - AMB_RS04660 0.26 -0.5
976,186 - AMB_RS04660 0.26 -0.6
976,226 + AMB_RS04660 0.28 +0.9
976,226 + AMB_RS04660 0.28 -1.2
976,227 - AMB_RS04660 0.28 +1.2
976,259 + AMB_RS04660 0.30 -0.3
976,280 + AMB_RS04660 0.32 -0.0
976,310 - AMB_RS04660 0.34 +0.1
976,343 + AMB_RS04660 0.36 -0.2
976,343 + AMB_RS04660 0.36 -0.5
976,344 - AMB_RS04660 0.36 -0.0

Or see this region's nucleotide sequence