Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04235

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04225 and AMB_RS04230 are separated by 20 nucleotidesAMB_RS04230 and AMB_RS04235 are separated by 109 nucleotidesAMB_RS04235 and AMB_RS04240 are separated by 11 nucleotidesAMB_RS04240 and AMB_RS04245 are separated by 109 nucleotidesAMB_RS04245 and AMB_RS04250 are separated by 106 nucleotides AMB_RS04225: AMB_RS04225 - EamA/RhaT family transporter, at 888,663 to 889,553 _RS04225 AMB_RS04230: AMB_RS04230 - acyl-CoA thioesterase, at 889,574 to 890,011 _RS04230 AMB_RS04235: AMB_RS04235 - hypothetical protein, at 890,121 to 890,567 _RS04235 AMB_RS04240: AMB_RS04240 - hypothetical protein, at 890,579 to 890,914 _RS04240 AMB_RS04245: AMB_RS04245 - (R)-hydratase, at 891,024 to 891,458 _RS04245 AMB_RS04250: AMB_RS04250 - bifunctional riboflavin kinase/FAD synthetase, at 891,565 to 892,554 _RS04250 Position (kb) 890 891Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 889.164 kb on + strand, within AMB_RS04225at 889.350 kb on + strand, within AMB_RS04225at 889.350 kb on + strand, within AMB_RS04225at 889.350 kb on + strand, within AMB_RS04225at 889.351 kb on - strand, within AMB_RS04225at 889.351 kb on - strand, within AMB_RS04225at 889.351 kb on - strand, within AMB_RS04225at 889.510 kb on + strandat 889.510 kb on + strandat 889.510 kb on + strandat 889.510 kb on + strandat 889.511 kb on - strandat 889.511 kb on - strandat 889.607 kb on + strandat 889.608 kb on - strandat 889.608 kb on - strandat 889.637 kb on + strand, within AMB_RS04230at 889.638 kb on - strand, within AMB_RS04230at 889.664 kb on - strand, within AMB_RS04230at 889.835 kb on - strand, within AMB_RS04230at 890.024 kb on + strandat 890.024 kb on + strandat 890.024 kb on + strandat 890.024 kb on + strandat 890.024 kb on + strandat 890.024 kb on + strandat 890.025 kb on - strandat 890.068 kb on + strandat 890.069 kb on - strandat 890.176 kb on + strand, within AMB_RS04235at 890.177 kb on - strand, within AMB_RS04235at 890.182 kb on + strand, within AMB_RS04235at 890.182 kb on + strand, within AMB_RS04235at 890.182 kb on + strand, within AMB_RS04235at 890.183 kb on - strand, within AMB_RS04235at 890.183 kb on - strand, within AMB_RS04235at 890.183 kb on - strand, within AMB_RS04235at 890.312 kb on - strand, within AMB_RS04235at 890.396 kb on - strand, within AMB_RS04235at 890.601 kb on + strandat 890.602 kb on - strandat 890.602 kb on - strandat 890.602 kb on - strandat 890.641 kb on - strand, within AMB_RS04240at 890.641 kb on - strand, within AMB_RS04240at 890.641 kb on - strand, within AMB_RS04240at 890.641 kb on - strand, within AMB_RS04240at 890.685 kb on + strand, within AMB_RS04240at 890.686 kb on - strand, within AMB_RS04240at 890.686 kb on - strand, within AMB_RS04240at 890.686 kb on - strand, within AMB_RS04240at 890.686 kb on - strand, within AMB_RS04240at 890.847 kb on + strand, within AMB_RS04240at 890.848 kb on - strand, within AMB_RS04240at 890.848 kb on - strand, within AMB_RS04240at 890.964 kb on + strandat 890.964 kb on + strandat 890.964 kb on + strandat 890.965 kb on - strandat 890.965 kb on - strandat 890.965 kb on - strandat 890.965 kb on - strandat 890.965 kb on - strandat 890.965 kb on - strandat 890.965 kb on - strandat 890.966 kb on + strandat 890.966 kb on + strandat 890.966 kb on + strandat 890.967 kb on - strandat 890.967 kb on - strandat 890.967 kb on - strandat 890.967 kb on - strandat 890.967 kb on - strandat 891.006 kb on + strandat 891.006 kb on + strandat 891.006 kb on + strandat 891.007 kb on - strandat 891.007 kb on - strandat 891.007 kb on - strandat 891.007 kb on - strandat 891.051 kb on + strandat 891.051 kb on + strandat 891.052 kb on - strandat 891.052 kb on - strandat 891.052 kb on - strandat 891.052 kb on - strandat 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.276 kb on + strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.277 kb on - strand, within AMB_RS04245at 891.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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889,164 + AMB_RS04225 0.56 +1.5
889,350 + AMB_RS04225 0.77 +0.0
889,350 + AMB_RS04225 0.77 -0.1
889,350 + AMB_RS04225 0.77 +0.0
889,351 - AMB_RS04225 0.77 -0.5
889,351 - AMB_RS04225 0.77 -0.2
889,351 - AMB_RS04225 0.77 -1.0
889,510 + -0.1
889,510 + +0.4
889,510 + +2.1
889,510 + -0.1
889,511 - +1.3
889,511 - -0.2
889,607 + -0.9
889,608 - +1.0
889,608 - +0.2
889,637 + AMB_RS04230 0.14 -0.7
889,638 - AMB_RS04230 0.15 -0.3
889,664 - AMB_RS04230 0.21 +0.3
889,835 - AMB_RS04230 0.60 +0.1
890,024 + -0.3
890,024 + +0.0
890,024 + +0.9
890,024 + -0.0
890,024 + -1.2
890,024 + -1.0
890,025 - -0.2
890,068 + +0.1
890,069 - -0.1
890,176 + AMB_RS04235 0.12 +0.5
890,177 - AMB_RS04235 0.13 -0.5
890,182 + AMB_RS04235 0.14 +0.9
890,182 + AMB_RS04235 0.14 -0.4
890,182 + AMB_RS04235 0.14 -0.2
890,183 - AMB_RS04235 0.14 +0.3
890,183 - AMB_RS04235 0.14 -0.6
890,183 - AMB_RS04235 0.14 +0.9
890,312 - AMB_RS04235 0.43 -1.5
890,396 - AMB_RS04235 0.62 -1.7
890,601 + -0.4
890,602 - -0.7
890,602 - +0.1
890,602 - -0.2
890,641 - AMB_RS04240 0.18 -0.7
890,641 - AMB_RS04240 0.18 -0.7
890,641 - AMB_RS04240 0.18 -0.5
890,641 - AMB_RS04240 0.18 -0.1
890,685 + AMB_RS04240 0.32 -0.2
890,686 - AMB_RS04240 0.32 -0.4
890,686 - AMB_RS04240 0.32 -0.1
890,686 - AMB_RS04240 0.32 -0.0
890,686 - AMB_RS04240 0.32 -0.6
890,847 + AMB_RS04240 0.80 +0.6
890,848 - AMB_RS04240 0.80 -0.4
890,848 - AMB_RS04240 0.80 -1.8
890,964 + -0.7
890,964 + -0.1
890,964 + -0.1
890,965 - -0.3
890,965 - +1.8
890,965 - -0.0
890,965 - -0.2
890,965 - +0.2
890,965 - -0.2
890,965 - +0.1
890,966 + +0.1
890,966 + +0.6
890,966 + +0.5
890,967 - +0.7
890,967 - +2.7
890,967 - -0.7
890,967 - +0.1
890,967 - -0.1
891,006 + -1.0
891,006 + +0.6
891,006 + -0.5
891,007 - -0.4
891,007 - -0.1
891,007 - -0.8
891,007 - -0.7
891,051 + +0.7
891,051 + +0.3
891,052 - -0.4
891,052 - +0.6
891,052 - +0.1
891,052 - +0.7
891,276 + AMB_RS04245 0.58 -0.8
891,276 + AMB_RS04245 0.58 -0.7
891,276 + AMB_RS04245 0.58 -0.3
891,276 + AMB_RS04245 0.58 +0.2
891,276 + AMB_RS04245 0.58 -1.5
891,276 + AMB_RS04245 0.58 -0.3
891,276 + AMB_RS04245 0.58 +0.1
891,276 + AMB_RS04245 0.58 -0.2
891,276 + AMB_RS04245 0.58 -1.4
891,276 + AMB_RS04245 0.58 +0.3
891,276 + AMB_RS04245 0.58 +0.1
891,276 + AMB_RS04245 0.58 +0.1
891,276 + AMB_RS04245 0.58 +0.1
891,276 + AMB_RS04245 0.58 -0.4
891,276 + AMB_RS04245 0.58 -0.7
891,276 + AMB_RS04245 0.58 -0.3
891,276 + AMB_RS04245 0.58 -0.7
891,276 + AMB_RS04245 0.58 -2.0
891,276 + AMB_RS04245 0.58 +0.1
891,276 + AMB_RS04245 0.58 -0.3
891,276 + AMB_RS04245 0.58 +0.3
891,276 + AMB_RS04245 0.58 +0.2
891,277 - AMB_RS04245 0.58 +1.1
891,277 - AMB_RS04245 0.58 -1.7
891,277 - AMB_RS04245 0.58 +0.2
891,277 - AMB_RS04245 0.58 -3.1
891,277 - AMB_RS04245 0.58 +0.0
891,277 - AMB_RS04245 0.58 +0.3
891,277 - AMB_RS04245 0.58 -0.7
891,277 - AMB_RS04245 0.58 +0.5
891,277 - AMB_RS04245 0.58 -0.1
891,277 - AMB_RS04245 0.58 -0.1
891,277 - AMB_RS04245 0.58 +0.2
891,277 - AMB_RS04245 0.58 +0.2
891,561 + -1.5

Or see this region's nucleotide sequence