Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04210 and AMB_RS04215 overlap by 4 nucleotides AMB_RS04215 and AMB_RS04220 are separated by 85 nucleotides AMB_RS04220 and AMB_RS04225 are separated by 105 nucleotides
AMB_RS04210: AMB_RS04210 - bacterioferritin, at 886,611 to 887,093
_RS04210
AMB_RS04215: AMB_RS04215 - bacterioferritin, at 887,090 to 887,581
_RS04215
AMB_RS04220: AMB_RS04220 - transcriptional regulator GcvA, at 887,667 to 888,557
_RS04220
AMB_RS04225: AMB_RS04225 - EamA/RhaT family transporter, at 888,663 to 889,553
_RS04225
Position (kb) 887
888
889 Strain fitness (log2 ratio) -1
0
1
2 at 886.954 kb on + strand, within AMB_RS04210 at 886.954 kb on + strand, within AMB_RS04210 at 886.954 kb on + strand, within AMB_RS04210 at 886.955 kb on - strand, within AMB_RS04210 at 886.955 kb on - strand, within AMB_RS04210 at 886.955 kb on - strand, within AMB_RS04210 at 886.960 kb on + strand, within AMB_RS04210 at 886.960 kb on + strand, within AMB_RS04210 at 886.961 kb on - strand, within AMB_RS04210 at 886.961 kb on - strand, within AMB_RS04210 at 886.961 kb on - strand, within AMB_RS04210 at 887.020 kb on + strand, within AMB_RS04210 at 887.020 kb on + strand, within AMB_RS04210 at 887.020 kb on + strand, within AMB_RS04210 at 887.021 kb on - strand, within AMB_RS04210 at 887.021 kb on - strand, within AMB_RS04210 at 887.021 kb on - strand, within AMB_RS04210 at 887.133 kb on + strand at 887.133 kb on + strand at 887.241 kb on + strand, within AMB_RS04215 at 887.461 kb on - strand, within AMB_RS04215 at 887.487 kb on + strand, within AMB_RS04215 at 887.488 kb on - strand, within AMB_RS04215 at 887.488 kb on - strand, within AMB_RS04215 at 887.559 kb on - strand at 887.559 kb on - strand at 887.559 kb on - strand at 887.622 kb on - strand at 887.622 kb on - strand at 887.622 kb on - strand at 887.648 kb on + strand at 887.659 kb on + strand at 887.755 kb on + strand at 887.755 kb on + strand at 887.756 kb on - strand, within AMB_RS04220 at 888.081 kb on + strand, within AMB_RS04220 at 888.681 kb on + strand at 888.681 kb on + strand at 888.681 kb on + strand at 889.164 kb on + strand, within AMB_RS04225 at 889.350 kb on + strand, within AMB_RS04225 at 889.350 kb on + strand, within AMB_RS04225 at 889.350 kb on + strand, within AMB_RS04225 at 889.351 kb on - strand, within AMB_RS04225 at 889.351 kb on - strand, within AMB_RS04225 at 889.351 kb on - strand, within AMB_RS04225 at 889.510 kb on + strand at 889.510 kb on + strand at 889.510 kb on + strand at 889.510 kb on + strand at 889.511 kb on - strand at 889.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 886,954 + AMB_RS04210 0.71 +0.1 886,954 + AMB_RS04210 0.71 -0.3 886,954 + AMB_RS04210 0.71 -0.7 886,955 - AMB_RS04210 0.71 -0.9 886,955 - AMB_RS04210 0.71 +0.5 886,955 - AMB_RS04210 0.71 +0.5 886,960 + AMB_RS04210 0.72 -0.2 886,960 + AMB_RS04210 0.72 +0.0 886,961 - AMB_RS04210 0.72 +0.2 886,961 - AMB_RS04210 0.72 +0.1 886,961 - AMB_RS04210 0.72 -0.5 887,020 + AMB_RS04210 0.85 -0.1 887,020 + AMB_RS04210 0.85 -0.7 887,020 + AMB_RS04210 0.85 +0.1 887,021 - AMB_RS04210 0.85 +0.7 887,021 - AMB_RS04210 0.85 +1.0 887,021 - AMB_RS04210 0.85 +0.2 887,133 + +0.3 887,133 + -0.0 887,241 + AMB_RS04215 0.31 -0.0 887,461 - AMB_RS04215 0.75 -1.4 887,487 + AMB_RS04215 0.81 -0.3 887,488 - AMB_RS04215 0.81 -0.4 887,488 - AMB_RS04215 0.81 -0.3 887,559 - -1.2 887,559 - +0.3 887,559 - +0.2 887,622 - -0.2 887,622 - +0.7 887,622 - -0.0 887,648 + +0.8 887,659 + +0.2 887,755 + -0.2 887,755 + +0.8 887,756 - AMB_RS04220 0.10 +0.1 888,081 + AMB_RS04220 0.46 +0.3 888,681 + -1.3 888,681 + -0.9 888,681 + -0.4 889,164 + AMB_RS04225 0.56 +1.5 889,350 + AMB_RS04225 0.77 +0.0 889,350 + AMB_RS04225 0.77 -0.1 889,350 + AMB_RS04225 0.77 +0.0 889,351 - AMB_RS04225 0.77 -0.5 889,351 - AMB_RS04225 0.77 -0.2 889,351 - AMB_RS04225 0.77 -1.0 889,510 + -0.1 889,510 + +0.4 889,510 + +2.1 889,510 + -0.1 889,511 - +1.3 889,511 - -0.2
Or see this region's nucleotide sequence