Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03990

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03985 and AMB_RS03990 are separated by 1 nucleotidesAMB_RS03990 and AMB_RS03995 overlap by 4 nucleotides AMB_RS03985: AMB_RS03985 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase, at 835,689 to 837,155 _RS03985 AMB_RS03990: AMB_RS03990 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 837,157 to 837,618 _RS03990 AMB_RS03995: AMB_RS03995 - tRNA epoxyqueuosine(34) reductase QueG, at 837,615 to 838,697 _RS03995 Position (kb) 837 838Strain fitness (log2 ratio) -2 -1 0 1at 837.268 kb on + strand, within AMB_RS03990at 837.268 kb on + strand, within AMB_RS03990at 837.269 kb on - strand, within AMB_RS03990at 837.269 kb on - strand, within AMB_RS03990at 837.269 kb on - strand, within AMB_RS03990at 837.352 kb on + strand, within AMB_RS03990at 837.760 kb on - strand, within AMB_RS03995at 837.876 kb on + strand, within AMB_RS03995at 837.876 kb on + strand, within AMB_RS03995at 837.876 kb on + strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.929 kb on + strand, within AMB_RS03995at 837.939 kb on + strand, within AMB_RS03995at 837.940 kb on - strand, within AMB_RS03995at 837.940 kb on - strand, within AMB_RS03995at 837.940 kb on - strand, within AMB_RS03995at 837.957 kb on + strand, within AMB_RS03995at 838.112 kb on + strand, within AMB_RS03995at 838.290 kb on + strand, within AMB_RS03995at 838.291 kb on - strand, within AMB_RS03995at 838.356 kb on + strand, within AMB_RS03995at 838.356 kb on + strand, within AMB_RS03995at 838.356 kb on + strand, within AMB_RS03995at 838.533 kb on + strand, within AMB_RS03995

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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837,268 + AMB_RS03990 0.24 +0.9
837,268 + AMB_RS03990 0.24 +0.3
837,269 - AMB_RS03990 0.24 -0.6
837,269 - AMB_RS03990 0.24 -0.3
837,269 - AMB_RS03990 0.24 -1.6
837,352 + AMB_RS03990 0.42 -0.7
837,760 - AMB_RS03995 0.13 -0.7
837,876 + AMB_RS03995 0.24 +0.8
837,876 + AMB_RS03995 0.24 -2.0
837,876 + AMB_RS03995 0.24 -0.4
837,877 - AMB_RS03995 0.24 +0.5
837,877 - AMB_RS03995 0.24 +0.7
837,877 - AMB_RS03995 0.24 -1.2
837,877 - AMB_RS03995 0.24 +0.3
837,929 + AMB_RS03995 0.29 -1.7
837,939 + AMB_RS03995 0.30 -0.3
837,940 - AMB_RS03995 0.30 +0.1
837,940 - AMB_RS03995 0.30 -0.2
837,940 - AMB_RS03995 0.30 -0.1
837,957 + AMB_RS03995 0.32 +0.1
838,112 + AMB_RS03995 0.46 -1.1
838,290 + AMB_RS03995 0.62 -0.3
838,291 - AMB_RS03995 0.62 -1.8
838,356 + AMB_RS03995 0.68 -0.5
838,356 + AMB_RS03995 0.68 +0.3
838,356 + AMB_RS03995 0.68 -1.9
838,533 + AMB_RS03995 0.85 +0.3

Or see this region's nucleotide sequence