Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02950

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02940 and AMB_RS02945 are separated by 8 nucleotidesAMB_RS02945 and AMB_RS02950 overlap by 1 nucleotidesAMB_RS02950 and AMB_RS02955 are separated by 251 nucleotidesAMB_RS02955 and AMB_RS02960 are separated by 181 nucleotides AMB_RS02940: AMB_RS02940 - VWA domain-containing protein, at 616,276 to 617,484 _RS02940 AMB_RS02945: AMB_RS02945 - hemerythrin, at 617,493 to 617,882 _RS02945 AMB_RS02950: AMB_RS02950 - MoxR family ATPase, at 617,882 to 618,727 _RS02950 AMB_RS02955: AMB_RS02955 - hypothetical protein, at 618,979 to 619,329 _RS02955 AMB_RS02960: AMB_RS02960 - CBS domain-containing protein, at 619,511 to 619,943 _RS02960 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2at 617.037 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.040 kb on - strand, within AMB_RS02940at 617.045 kb on + strand, within AMB_RS02940at 617.046 kb on - strand, within AMB_RS02940at 617.046 kb on - strand, within AMB_RS02940at 617.338 kb on + strand, within AMB_RS02940at 617.360 kb on + strand, within AMB_RS02940at 617.360 kb on + strand, within AMB_RS02940at 617.360 kb on + strand, within AMB_RS02940at 617.361 kb on - strand, within AMB_RS02940at 617.361 kb on - strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.423 kb on + strandat 617.424 kb on - strandat 617.424 kb on - strandat 617.589 kb on - strand, within AMB_RS02945at 617.617 kb on + strand, within AMB_RS02945at 617.740 kb on + strand, within AMB_RS02945at 617.740 kb on + strand, within AMB_RS02945at 617.741 kb on - strand, within AMB_RS02945at 617.741 kb on - strand, within AMB_RS02945at 618.108 kb on - strand, within AMB_RS02950at 618.150 kb on + strand, within AMB_RS02950at 618.150 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.202 kb on - strand, within AMB_RS02950at 618.202 kb on - strand, within AMB_RS02950at 618.202 kb on - strand, within AMB_RS02950at 618.309 kb on + strand, within AMB_RS02950at 618.310 kb on - strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.513 kb on + strand, within AMB_RS02950at 618.513 kb on + strand, within AMB_RS02950at 618.514 kb on - strand, within AMB_RS02950at 618.514 kb on - strand, within AMB_RS02950at 618.519 kb on + strand, within AMB_RS02950at 618.520 kb on - strand, within AMB_RS02950at 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.706 kb on + strandat 618.706 kb on + strandat 618.707 kb on - strandat 618.755 kb on + strandat 618.756 kb on - strandat 618.756 kb on - strandat 618.921 kb on - strandat 618.980 kb on + strandat 619.342 kb on + strandat 619.342 kb on + strandat 619.342 kb on + strandat 619.430 kb on + strandat 619.430 kb on + strandat 619.431 kb on - strandat 619.431 kb on - strandat 619.431 kb on - strandat 619.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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617,037 + AMB_RS02940 0.63 +0.5
617,039 + AMB_RS02940 0.63 -1.0
617,039 + AMB_RS02940 0.63 -0.3
617,039 + AMB_RS02940 0.63 -1.0
617,039 + AMB_RS02940 0.63 +0.1
617,040 - AMB_RS02940 0.63 +0.0
617,045 + AMB_RS02940 0.64 -0.4
617,046 - AMB_RS02940 0.64 -0.9
617,046 - AMB_RS02940 0.64 -0.1
617,338 + AMB_RS02940 0.88 +0.1
617,360 + AMB_RS02940 0.90 -0.3
617,360 + AMB_RS02940 0.90 -0.3
617,360 + AMB_RS02940 0.90 -0.5
617,361 - AMB_RS02940 0.90 +1.4
617,361 - AMB_RS02940 0.90 +0.1
617,363 + AMB_RS02940 0.90 +2.0
617,363 + AMB_RS02940 0.90 -2.6
617,363 + AMB_RS02940 0.90 -0.5
617,363 + AMB_RS02940 0.90 -0.1
617,363 + AMB_RS02940 0.90 +0.2
617,363 + AMB_RS02940 0.90 +0.6
617,363 + AMB_RS02940 0.90 +0.4
617,364 - +0.0
617,364 - -0.2
617,364 - -0.2
617,364 - -0.3
617,364 - +0.1
617,364 - -0.1
617,364 - +0.8
617,364 - -1.5
617,364 - -0.5
617,364 - -0.6
617,423 + -0.3
617,424 - -0.2
617,424 - +0.7
617,589 - AMB_RS02945 0.25 -1.3
617,617 + AMB_RS02945 0.32 +0.2
617,740 + AMB_RS02945 0.63 -0.0
617,740 + AMB_RS02945 0.63 -0.5
617,741 - AMB_RS02945 0.64 -0.3
617,741 - AMB_RS02945 0.64 -0.3
618,108 - AMB_RS02950 0.27 +0.1
618,150 + AMB_RS02950 0.32 +0.2
618,150 + AMB_RS02950 0.32 -0.5
618,201 + AMB_RS02950 0.38 -0.1
618,201 + AMB_RS02950 0.38 +0.4
618,201 + AMB_RS02950 0.38 +0.1
618,201 + AMB_RS02950 0.38 -0.1
618,201 + AMB_RS02950 0.38 -0.0
618,202 - AMB_RS02950 0.38 -2.3
618,202 - AMB_RS02950 0.38 -0.4
618,202 - AMB_RS02950 0.38 +0.4
618,309 + AMB_RS02950 0.50 -0.3
618,310 - AMB_RS02950 0.51 +1.3
618,447 + AMB_RS02950 0.67 +1.0
618,447 + AMB_RS02950 0.67 -0.5
618,447 + AMB_RS02950 0.67 +0.2
618,447 + AMB_RS02950 0.67 -0.2
618,448 - AMB_RS02950 0.67 -0.6
618,448 - AMB_RS02950 0.67 +0.4
618,448 - AMB_RS02950 0.67 -0.4
618,448 - AMB_RS02950 0.67 -0.9
618,448 - AMB_RS02950 0.67 +0.2
618,448 - AMB_RS02950 0.67 +0.9
618,513 + AMB_RS02950 0.75 -0.1
618,513 + AMB_RS02950 0.75 -0.4
618,514 - AMB_RS02950 0.75 +0.2
618,514 - AMB_RS02950 0.75 +0.4
618,519 + AMB_RS02950 0.75 -1.0
618,520 - AMB_RS02950 0.75 -0.9
618,702 + -0.2
618,702 + -0.8
618,702 + -0.0
618,702 + -0.8
618,702 + +0.1
618,702 + -0.6
618,703 - -1.2
618,703 - +0.0
618,703 - -0.6
618,703 - -0.7
618,703 - +0.1
618,703 - +0.3
618,703 - -0.8
618,703 - -0.6
618,703 - +0.1
618,706 + -0.9
618,706 + +0.0
618,707 - -2.0
618,755 + -0.7
618,756 - -0.5
618,756 - +0.0
618,921 - -1.0
618,980 + -0.3
619,342 + -0.4
619,342 + -0.4
619,342 + -0.4
619,430 + -0.9
619,430 + -0.4
619,431 - -0.0
619,431 - -0.3
619,431 - -0.3
619,513 - -0.2

Or see this region's nucleotide sequence