Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02635

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02630 and AMB_RS02635 are separated by 173 nucleotidesAMB_RS02635 and AMB_RS02640 are separated by 72 nucleotides AMB_RS02630: AMB_RS02630 - parvulin peptidyl-prolyl isomerase, at 547,734 to 548,696 _RS02630 AMB_RS02635: AMB_RS02635 - type I glyceraldehyde-3-phosphate dehydrogenase, at 548,870 to 549,868 _RS02635 AMB_RS02640: AMB_RS02640 - phosphoglycerate kinase, at 549,941 to 551,188 _RS02640 Position (kb) 548 549 550Strain fitness (log2 ratio) -2 -1 0 1at 548.670 kb on + strandat 548.748 kb on + strandat 548.748 kb on + strandat 548.748 kb on + strandat 548.748 kb on + strandat 548.837 kb on + strandat 548.837 kb on + strandat 548.837 kb on + strandat 548.837 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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548,670 + -0.5
548,748 + -2.4
548,748 + +0.2
548,748 + +0.3
548,748 + -0.7
548,837 + -0.5
548,837 + -0.6
548,837 + -0.2
548,837 + +0.6
549,866 + -1.2
549,866 + +0.7
549,866 + -0.6
549,866 + -1.7
549,866 + -2.5
549,866 + -0.9
549,866 + -1.4
549,866 + -1.9
549,866 + -0.0

Or see this region's nucleotide sequence