Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02190

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02185 and AMB_RS02190 are separated by 1 nucleotidesAMB_RS02190 and AMB_RS02195 are separated by 40 nucleotides AMB_RS02185: AMB_RS02185 - C4-dicarboxylate ABC transporter, at 460,285 to 461,313 _RS02185 AMB_RS02190: AMB_RS02190 - C4-dicarboxylate ABC transporter, at 461,315 to 463,270 _RS02190 AMB_RS02195: AMB_RS02195 - branched-chain amino acid ABC transporter, at 463,311 to 465,560 _RS02195 Position (kb) 461 462 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.583 kb on - strand, within AMB_RS02185at 460.594 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 461.164 kb on + strand, within AMB_RS02185at 461.164 kb on + strand, within AMB_RS02185at 461.164 kb on + strand, within AMB_RS02185at 461.165 kb on - strand, within AMB_RS02185at 461.254 kb on + strandat 461.254 kb on + strandat 461.254 kb on + strandat 461.255 kb on - strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.955 kb on - strand, within AMB_RS02190at 462.083 kb on + strand, within AMB_RS02190at 462.084 kb on - strand, within AMB_RS02190at 462.084 kb on - strand, within AMB_RS02190at 462.176 kb on + strand, within AMB_RS02190at 462.176 kb on + strand, within AMB_RS02190at 462.176 kb on + strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.332 kb on + strand, within AMB_RS02190at 462.416 kb on + strand, within AMB_RS02190at 462.416 kb on + strand, within AMB_RS02190at 462.416 kb on + strand, within AMB_RS02190at 462.416 kb on + strand, within AMB_RS02190at 462.416 kb on + strand, within AMB_RS02190at 462.417 kb on - strand, within AMB_RS02190at 462.417 kb on - strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.596 kb on + strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.597 kb on - strand, within AMB_RS02190at 462.677 kb on + strand, within AMB_RS02190at 462.677 kb on + strand, within AMB_RS02190at 462.677 kb on + strand, within AMB_RS02190at 462.677 kb on + strand, within AMB_RS02190at 462.678 kb on - strand, within AMB_RS02190at 462.678 kb on - strand, within AMB_RS02190at 462.678 kb on - strand, within AMB_RS02190at 462.752 kb on + strand, within AMB_RS02190at 462.752 kb on + strand, within AMB_RS02190at 462.752 kb on + strand, within AMB_RS02190at 462.752 kb on + strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.753 kb on - strand, within AMB_RS02190at 462.848 kb on + strand, within AMB_RS02190at 462.848 kb on + strand, within AMB_RS02190at 462.848 kb on + strand, within AMB_RS02190at 462.849 kb on - strand, within AMB_RS02190at 462.849 kb on - strand, within AMB_RS02190at 462.849 kb on - strand, within AMB_RS02190at 462.849 kb on - strand, within AMB_RS02190at 462.849 kb on - strand, within AMB_RS02190at 462.854 kb on + strand, within AMB_RS02190at 462.854 kb on + strand, within AMB_RS02190at 462.855 kb on - strand, within AMB_RS02190at 462.855 kb on - strand, within AMB_RS02190at 462.855 kb on - strand, within AMB_RS02190at 462.855 kb on - strand, within AMB_RS02190at 462.855 kb on - strand, within AMB_RS02190at 462.952 kb on + strand, within AMB_RS02190at 462.952 kb on + strand, within AMB_RS02190at 462.953 kb on - strand, within AMB_RS02190at 463.330 kb on + strandat 463.330 kb on + strandat 463.330 kb on + strandat 463.330 kb on + strandat 463.330 kb on + strandat 463.330 kb on + strandat 463.331 kb on - strandat 463.331 kb on - strandat 463.331 kb on - strandat 463.331 kb on - strandat 463.348 kb on + strandat 463.348 kb on + strandat 463.349 kb on - strandat 463.349 kb on - strandat 463.349 kb on - strandat 463.495 kb on + strandat 463.495 kb on + strandat 463.496 kb on - strandat 463.496 kb on - strandat 463.496 kb on - strandat 463.496 kb on - strandat 463.496 kb on - strandat 463.498 kb on + strandat 463.555 kb on + strand, within AMB_RS02195at 463.555 kb on + strand, within AMB_RS02195at 463.556 kb on - strand, within AMB_RS02195at 463.684 kb on + strand, within AMB_RS02195at 463.684 kb on + strand, within AMB_RS02195at 463.685 kb on - strand, within AMB_RS02195at 463.735 kb on + strand, within AMB_RS02195at 463.736 kb on - strand, within AMB_RS02195at 463.736 kb on - strand, within AMB_RS02195at 463.750 kb on + strand, within AMB_RS02195at 463.750 kb on + strand, within AMB_RS02195at 463.750 kb on + strand, within AMB_RS02195at 463.750 kb on + strand, within AMB_RS02195at 463.750 kb on + strand, within AMB_RS02195at 463.751 kb on - strand, within AMB_RS02195at 463.751 kb on - strand, within AMB_RS02195at 463.795 kb on + strand, within AMB_RS02195at 463.796 kb on - strand, within AMB_RS02195at 463.801 kb on + strand, within AMB_RS02195at 463.801 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.831 kb on + strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.832 kb on - strand, within AMB_RS02195at 463.981 kb on + strand, within AMB_RS02195at 463.982 kb on - strand, within AMB_RS02195at 464.011 kb on + strand, within AMB_RS02195at 464.020 kb on + strand, within AMB_RS02195at 464.020 kb on + strand, within AMB_RS02195at 464.020 kb on + strand, within AMB_RS02195at 464.233 kb on + strand, within AMB_RS02195at 464.233 kb on + strand, within AMB_RS02195

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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460,507 + AMB_RS02185 0.22 -0.8
460,507 + AMB_RS02185 0.22 -0.0
460,507 + AMB_RS02185 0.22 -0.4
460,507 + AMB_RS02185 0.22 -0.2
460,508 - AMB_RS02185 0.22 -0.2
460,508 - AMB_RS02185 0.22 +0.0
460,508 - AMB_RS02185 0.22 +0.1
460,508 - AMB_RS02185 0.22 -0.2
460,508 - AMB_RS02185 0.22 +0.1
460,508 - AMB_RS02185 0.22 -0.2
460,583 - AMB_RS02185 0.29 +0.3
460,594 + AMB_RS02185 0.30 -2.3
460,654 + AMB_RS02185 0.36 -1.1
460,654 + AMB_RS02185 0.36 -2.1
460,654 + AMB_RS02185 0.36 -0.4
460,654 + AMB_RS02185 0.36 +0.2
460,655 - AMB_RS02185 0.36 -1.5
460,655 - AMB_RS02185 0.36 -0.2
460,655 - AMB_RS02185 0.36 +1.1
460,897 + AMB_RS02185 0.59 -0.6
460,897 + AMB_RS02185 0.59 +0.5
460,897 + AMB_RS02185 0.59 +0.2
460,897 + AMB_RS02185 0.59 +0.3
460,897 + AMB_RS02185 0.59 +0.3
460,897 + AMB_RS02185 0.59 +0.7
460,897 + AMB_RS02185 0.59 -0.7
460,897 + AMB_RS02185 0.59 -0.5
460,898 - AMB_RS02185 0.60 +0.1
460,898 - AMB_RS02185 0.60 -0.3
460,898 - AMB_RS02185 0.60 -2.5
460,898 - AMB_RS02185 0.60 -0.4
460,898 - AMB_RS02185 0.60 -0.4
460,898 - AMB_RS02185 0.60 +0.1
460,898 - AMB_RS02185 0.60 -0.2
460,898 - AMB_RS02185 0.60 +1.3
460,898 - AMB_RS02185 0.60 -0.1
461,164 + AMB_RS02185 0.85 -1.3
461,164 + AMB_RS02185 0.85 +0.3
461,164 + AMB_RS02185 0.85 -0.4
461,165 - AMB_RS02185 0.86 -0.7
461,254 + -0.8
461,254 + -1.4
461,254 + +0.8
461,255 - -1.7
461,306 + -0.6
461,306 + -0.4
461,306 + +0.3
461,306 + +0.3
461,306 + -0.7
461,306 + +1.4
461,306 + +0.6
461,307 - -1.3
461,307 - -0.4
461,307 - +0.3
461,307 - +0.5
461,307 - +0.4
461,307 - +0.1
461,307 - +0.9
461,307 - -0.7
461,307 - +0.4
461,955 - AMB_RS02190 0.33 -2.3
462,083 + AMB_RS02190 0.39 +0.1
462,084 - AMB_RS02190 0.39 -0.4
462,084 - AMB_RS02190 0.39 +1.3
462,176 + AMB_RS02190 0.44 +0.4
462,176 + AMB_RS02190 0.44 -1.8
462,176 + AMB_RS02190 0.44 +0.0
462,177 - AMB_RS02190 0.44 -0.4
462,177 - AMB_RS02190 0.44 -1.3
462,177 - AMB_RS02190 0.44 -0.2
462,177 - AMB_RS02190 0.44 -0.2
462,232 + AMB_RS02190 0.47 -0.3
462,232 + AMB_RS02190 0.47 -0.6
462,232 + AMB_RS02190 0.47 +2.8
462,232 + AMB_RS02190 0.47 +0.4
462,233 - AMB_RS02190 0.47 -0.1
462,233 - AMB_RS02190 0.47 -0.4
462,233 - AMB_RS02190 0.47 +0.0
462,233 - AMB_RS02190 0.47 +0.3
462,332 + AMB_RS02190 0.52 +0.5
462,416 + AMB_RS02190 0.56 -0.1
462,416 + AMB_RS02190 0.56 +0.2
462,416 + AMB_RS02190 0.56 +0.3
462,416 + AMB_RS02190 0.56 +0.7
462,416 + AMB_RS02190 0.56 +0.2
462,417 - AMB_RS02190 0.56 -1.0
462,417 - AMB_RS02190 0.56 +0.0
462,596 + AMB_RS02190 0.65 +0.5
462,596 + AMB_RS02190 0.65 -0.2
462,596 + AMB_RS02190 0.65 -0.3
462,596 + AMB_RS02190 0.65 -0.4
462,596 + AMB_RS02190 0.65 -0.7
462,596 + AMB_RS02190 0.65 -0.0
462,596 + AMB_RS02190 0.65 +0.0
462,596 + AMB_RS02190 0.65 +0.7
462,596 + AMB_RS02190 0.65 -0.1
462,597 - AMB_RS02190 0.66 -0.1
462,597 - AMB_RS02190 0.66 -0.2
462,597 - AMB_RS02190 0.66 -0.4
462,597 - AMB_RS02190 0.66 -0.3
462,597 - AMB_RS02190 0.66 -1.3
462,597 - AMB_RS02190 0.66 +0.1
462,597 - AMB_RS02190 0.66 -0.3
462,597 - AMB_RS02190 0.66 +0.3
462,597 - AMB_RS02190 0.66 +0.3
462,597 - AMB_RS02190 0.66 +0.3
462,677 + AMB_RS02190 0.70 -0.4
462,677 + AMB_RS02190 0.70 -3.0
462,677 + AMB_RS02190 0.70 -0.7
462,677 + AMB_RS02190 0.70 -1.1
462,678 - AMB_RS02190 0.70 +3.0
462,678 - AMB_RS02190 0.70 +0.0
462,678 - AMB_RS02190 0.70 -0.2
462,752 + AMB_RS02190 0.73 +0.3
462,752 + AMB_RS02190 0.73 -0.5
462,752 + AMB_RS02190 0.73 +0.6
462,752 + AMB_RS02190 0.73 -0.3
462,753 - AMB_RS02190 0.74 -0.7
462,753 - AMB_RS02190 0.74 -0.3
462,753 - AMB_RS02190 0.74 +0.3
462,753 - AMB_RS02190 0.74 -0.1
462,753 - AMB_RS02190 0.74 -0.3
462,753 - AMB_RS02190 0.74 +0.3
462,753 - AMB_RS02190 0.74 +0.7
462,753 - AMB_RS02190 0.74 -1.0
462,848 + AMB_RS02190 0.78 -0.4
462,848 + AMB_RS02190 0.78 -1.9
462,848 + AMB_RS02190 0.78 -0.5
462,849 - AMB_RS02190 0.78 +0.2
462,849 - AMB_RS02190 0.78 -0.3
462,849 - AMB_RS02190 0.78 -0.8
462,849 - AMB_RS02190 0.78 -1.4
462,849 - AMB_RS02190 0.78 +0.7
462,854 + AMB_RS02190 0.79 -0.5
462,854 + AMB_RS02190 0.79 -0.0
462,855 - AMB_RS02190 0.79 -0.4
462,855 - AMB_RS02190 0.79 -0.5
462,855 - AMB_RS02190 0.79 -0.9
462,855 - AMB_RS02190 0.79 -0.4
462,855 - AMB_RS02190 0.79 +0.5
462,952 + AMB_RS02190 0.84 +0.1
462,952 + AMB_RS02190 0.84 -1.1
462,953 - AMB_RS02190 0.84 +0.4
463,330 + -0.1
463,330 + -0.1
463,330 + +0.8
463,330 + -0.9
463,330 + +1.3
463,330 + +0.2
463,331 - -0.5
463,331 - -0.4
463,331 - +0.0
463,331 - -0.7
463,348 + -0.3
463,348 + -0.8
463,349 - -0.6
463,349 - +0.3
463,349 - -1.6
463,495 + +0.4
463,495 + -0.3
463,496 - -0.2
463,496 - -1.6
463,496 - -0.9
463,496 - +0.4
463,496 - +0.9
463,498 + -0.4
463,555 + AMB_RS02195 0.11 -0.8
463,555 + AMB_RS02195 0.11 -0.5
463,556 - AMB_RS02195 0.11 -0.9
463,684 + AMB_RS02195 0.17 -0.3
463,684 + AMB_RS02195 0.17 -1.5
463,685 - AMB_RS02195 0.17 -0.3
463,735 + AMB_RS02195 0.19 -0.3
463,736 - AMB_RS02195 0.19 -1.3
463,736 - AMB_RS02195 0.19 -1.2
463,750 + AMB_RS02195 0.20 -1.0
463,750 + AMB_RS02195 0.20 -0.1
463,750 + AMB_RS02195 0.20 +0.9
463,750 + AMB_RS02195 0.20 +0.6
463,750 + AMB_RS02195 0.20 -0.6
463,751 - AMB_RS02195 0.20 -0.6
463,751 - AMB_RS02195 0.20 -0.5
463,795 + AMB_RS02195 0.22 -0.3
463,796 - AMB_RS02195 0.22 +0.3
463,801 + AMB_RS02195 0.22 +1.1
463,801 + AMB_RS02195 0.22 -0.1
463,831 + AMB_RS02195 0.23 +0.4
463,831 + AMB_RS02195 0.23 -0.1
463,831 + AMB_RS02195 0.23 +1.1
463,831 + AMB_RS02195 0.23 -0.6
463,831 + AMB_RS02195 0.23 +0.0
463,831 + AMB_RS02195 0.23 -0.2
463,831 + AMB_RS02195 0.23 -0.1
463,831 + AMB_RS02195 0.23 +0.6
463,832 - AMB_RS02195 0.23 -0.3
463,832 - AMB_RS02195 0.23 +0.9
463,832 - AMB_RS02195 0.23 -1.1
463,832 - AMB_RS02195 0.23 +0.0
463,832 - AMB_RS02195 0.23 -0.3
463,832 - AMB_RS02195 0.23 -0.4
463,832 - AMB_RS02195 0.23 -0.5
463,832 - AMB_RS02195 0.23 +1.1
463,832 - AMB_RS02195 0.23 +0.7
463,981 + AMB_RS02195 0.30 +0.2
463,982 - AMB_RS02195 0.30 -0.2
464,011 + AMB_RS02195 0.31 +0.9
464,020 + AMB_RS02195 0.32 +0.3
464,020 + AMB_RS02195 0.32 +0.8
464,020 + AMB_RS02195 0.32 -0.0
464,233 + AMB_RS02195 0.41 -0.1
464,233 + AMB_RS02195 0.41 -1.6

Or see this region's nucleotide sequence