Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01740

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01735 and AMB_RS01740 are separated by 393 nucleotidesAMB_RS01740 and AMB_RS01745 are separated by 95 nucleotidesAMB_RS01745 and AMB_RS01750 overlap by 4 nucleotides AMB_RS01735: AMB_RS01735 - Uncharacterized protein, involved in the regulation of septum location, at 380,905 to 381,195 _RS01735 AMB_RS01740: AMB_RS01740 - hypothetical protein, at 381,589 to 381,834 _RS01740 AMB_RS01745: AMB_RS01745 - hypothetical protein, at 381,930 to 382,334 _RS01745 AMB_RS01750: AMB_RS01750 - recombinase family protein, at 382,331 to 383,662 _RS01750 Position (kb) 381 382Strain fitness (log2 ratio) -2 -1 0 1at 380.893 kb on - strandat 380.911 kb on - strandat 380.929 kb on - strandat 380.999 kb on + strand, within AMB_RS01735at 380.999 kb on + strand, within AMB_RS01735at 380.999 kb on + strand, within AMB_RS01735at 380.999 kb on + strand, within AMB_RS01735at 380.999 kb on + strand, within AMB_RS01735at 380.999 kb on + strand, within AMB_RS01735at 381.000 kb on - strand, within AMB_RS01735at 381.000 kb on - strand, within AMB_RS01735at 381.000 kb on - strand, within AMB_RS01735at 381.139 kb on - strand, within AMB_RS01735at 381.139 kb on - strand, within AMB_RS01735at 381.139 kb on - strand, within AMB_RS01735at 381.173 kb on + strandat 381.173 kb on + strandat 381.174 kb on - strandat 381.174 kb on - strandat 381.174 kb on - strandat 381.193 kb on + strandat 381.248 kb on + strandat 381.277 kb on + strandat 381.277 kb on + strandat 381.278 kb on - strandat 381.297 kb on + strandat 381.298 kb on - strandat 381.484 kb on + strandat 381.484 kb on + strandat 381.507 kb on + strandat 381.508 kb on - strandat 381.508 kb on - strandat 381.508 kb on - strandat 381.508 kb on - strandat 381.508 kb on - strandat 381.508 kb on - strandat 381.508 kb on - strandat 381.544 kb on + strandat 381.544 kb on + strandat 381.545 kb on - strandat 381.644 kb on + strand, within AMB_RS01740at 381.644 kb on + strand, within AMB_RS01740at 381.645 kb on - strand, within AMB_RS01740at 381.645 kb on - strand, within AMB_RS01740at 381.752 kb on + strand, within AMB_RS01740at 381.752 kb on + strand, within AMB_RS01740at 381.753 kb on - strand, within AMB_RS01740at 381.753 kb on - strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.800 kb on + strand, within AMB_RS01740at 381.801 kb on - strand, within AMB_RS01740at 381.801 kb on - strand, within AMB_RS01740at 381.801 kb on - strand, within AMB_RS01740at 381.801 kb on - strand, within AMB_RS01740at 381.896 kb on + strandat 381.896 kb on + strandat 381.897 kb on - strandat 382.075 kb on + strand, within AMB_RS01745at 382.076 kb on - strand, within AMB_RS01745at 382.090 kb on + strand, within AMB_RS01745at 382.090 kb on + strand, within AMB_RS01745at 382.345 kb on + strandat 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.690 kb on + strand, within AMB_RS01750at 382.691 kb on - strand, within AMB_RS01750at 382.691 kb on - strand, within AMB_RS01750at 382.691 kb on - strand, within AMB_RS01750at 382.691 kb on - strand, within AMB_RS01750at 382.692 kb on + strand, within AMB_RS01750at 382.692 kb on + strand, within AMB_RS01750at 382.692 kb on + strand, within AMB_RS01750at 382.692 kb on + strand, within AMB_RS01750at 382.692 kb on + strand, within AMB_RS01750at 382.692 kb on + strand, within AMB_RS01750at 382.693 kb on - strand, within AMB_RS01750at 382.693 kb on - strand, within AMB_RS01750at 382.693 kb on - strand, within AMB_RS01750at 382.693 kb on - strand, within AMB_RS01750at 382.693 kb on - strand, within AMB_RS01750at 382.695 kb on + strand, within AMB_RS01750at 382.696 kb on - strand, within AMB_RS01750at 382.701 kb on + strand, within AMB_RS01750

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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380,893 - -0.1
380,911 - -1.7
380,929 - -0.6
380,999 + AMB_RS01735 0.32 -0.2
380,999 + AMB_RS01735 0.32 -0.6
380,999 + AMB_RS01735 0.32 +0.1
380,999 + AMB_RS01735 0.32 -0.6
380,999 + AMB_RS01735 0.32 +0.5
380,999 + AMB_RS01735 0.32 -1.1
381,000 - AMB_RS01735 0.33 +0.6
381,000 - AMB_RS01735 0.33 -0.9
381,000 - AMB_RS01735 0.33 -0.0
381,139 - AMB_RS01735 0.80 -0.4
381,139 - AMB_RS01735 0.80 +0.8
381,139 - AMB_RS01735 0.80 -0.2
381,173 + -0.1
381,173 + +1.7
381,174 - +0.7
381,174 - +0.0
381,174 - -1.2
381,193 + +1.3
381,248 + +1.2
381,277 + -1.6
381,277 + -1.7
381,278 - -0.3
381,297 + +0.0
381,298 - -0.5
381,484 + +0.0
381,484 + -0.2
381,507 + +0.6
381,508 - -0.5
381,508 - -2.6
381,508 - +0.4
381,508 - -1.3
381,508 - -0.3
381,508 - -1.3
381,508 - -0.7
381,544 + -0.7
381,544 + -1.2
381,545 - -0.6
381,644 + AMB_RS01740 0.22 -0.2
381,644 + AMB_RS01740 0.22 +0.3
381,645 - AMB_RS01740 0.23 -0.2
381,645 - AMB_RS01740 0.23 -0.5
381,752 + AMB_RS01740 0.66 -1.2
381,752 + AMB_RS01740 0.66 -0.3
381,753 - AMB_RS01740 0.67 -1.3
381,753 - AMB_RS01740 0.67 +0.7
381,800 + AMB_RS01740 0.86 +0.1
381,800 + AMB_RS01740 0.86 -0.3
381,800 + AMB_RS01740 0.86 +0.2
381,800 + AMB_RS01740 0.86 +0.5
381,800 + AMB_RS01740 0.86 +0.0
381,800 + AMB_RS01740 0.86 +0.0
381,800 + AMB_RS01740 0.86 -0.9
381,800 + AMB_RS01740 0.86 -2.5
381,800 + AMB_RS01740 0.86 +0.1
381,801 - AMB_RS01740 0.86 -1.4
381,801 - AMB_RS01740 0.86 -1.0
381,801 - AMB_RS01740 0.86 +1.2
381,801 - AMB_RS01740 0.86 -0.3
381,896 + +0.2
381,896 + -1.0
381,897 - -0.5
382,075 + AMB_RS01745 0.36 -0.4
382,076 - AMB_RS01745 0.36 -1.3
382,090 + AMB_RS01745 0.40 -0.7
382,090 + AMB_RS01745 0.40 -0.2
382,345 + -0.7
382,690 + AMB_RS01750 0.27 +0.1
382,690 + AMB_RS01750 0.27 +0.3
382,690 + AMB_RS01750 0.27 -0.2
382,690 + AMB_RS01750 0.27 -0.2
382,690 + AMB_RS01750 0.27 -0.3
382,690 + AMB_RS01750 0.27 -0.5
382,690 + AMB_RS01750 0.27 +0.0
382,690 + AMB_RS01750 0.27 -0.4
382,690 + AMB_RS01750 0.27 -1.5
382,691 - AMB_RS01750 0.27 -0.7
382,691 - AMB_RS01750 0.27 +0.1
382,691 - AMB_RS01750 0.27 +0.1
382,691 - AMB_RS01750 0.27 -0.2
382,692 + AMB_RS01750 0.27 -2.5
382,692 + AMB_RS01750 0.27 -0.8
382,692 + AMB_RS01750 0.27 -0.1
382,692 + AMB_RS01750 0.27 -0.2
382,692 + AMB_RS01750 0.27 -1.1
382,692 + AMB_RS01750 0.27 +0.3
382,693 - AMB_RS01750 0.27 +0.3
382,693 - AMB_RS01750 0.27 -0.6
382,693 - AMB_RS01750 0.27 +0.7
382,693 - AMB_RS01750 0.27 -0.2
382,693 - AMB_RS01750 0.27 -0.1
382,695 + AMB_RS01750 0.27 -0.3
382,696 - AMB_RS01750 0.27 +0.1
382,701 + AMB_RS01750 0.28 -0.4

Or see this region's nucleotide sequence