Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01590 and AMB_RS01595 overlap by 4 nucleotides AMB_RS01595 and AMB_RS01600 are separated by 59 nucleotides AMB_RS01600 and AMB_RS01605 are separated by 168 nucleotides
AMB_RS01590: AMB_RS01590 - multidrug ABC transporter permease, at 353,978 to 354,790
_RS01590
AMB_RS01595: AMB_RS01595 - XRE family transcriptional regulator, at 354,787 to 355,593
_RS01595
AMB_RS01600: AMB_RS01600 - class I SAM-dependent methyltransferase, at 355,653 to 356,417
_RS01600
AMB_RS01605: AMB_RS01605 - aspartate aminotransferase family protein, at 356,586 to 357,740
_RS01605
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 354.773 kb on + strand at 354.774 kb on - strand at 354.774 kb on - strand at 354.788 kb on + strand at 354.886 kb on + strand, within AMB_RS01595 at 354.886 kb on + strand, within AMB_RS01595 at 354.887 kb on - strand, within AMB_RS01595 at 355.206 kb on - strand, within AMB_RS01595 at 355.253 kb on - strand, within AMB_RS01595 at 355.253 kb on - strand, within AMB_RS01595 at 355.313 kb on + strand, within AMB_RS01595 at 355.313 kb on + strand, within AMB_RS01595 at 355.314 kb on - strand, within AMB_RS01595 at 355.314 kb on - strand, within AMB_RS01595 at 355.574 kb on - strand at 355.576 kb on - strand at 355.593 kb on + strand at 355.713 kb on + strand at 355.714 kb on - strand at 355.714 kb on - strand at 355.714 kb on - strand at 355.714 kb on - strand at 355.853 kb on + strand, within AMB_RS01600 at 355.854 kb on - strand, within AMB_RS01600 at 355.854 kb on - strand, within AMB_RS01600 at 355.854 kb on - strand, within AMB_RS01600 at 355.866 kb on + strand, within AMB_RS01600 at 355.867 kb on - strand, within AMB_RS01600 at 355.867 kb on - strand, within AMB_RS01600 at 355.867 kb on - strand, within AMB_RS01600 at 355.867 kb on - strand, within AMB_RS01600 at 355.867 kb on - strand, within AMB_RS01600 at 356.007 kb on - strand, within AMB_RS01600 at 356.175 kb on + strand, within AMB_RS01600 at 356.175 kb on + strand, within AMB_RS01600 at 356.175 kb on + strand, within AMB_RS01600 at 356.175 kb on + strand, within AMB_RS01600 at 356.176 kb on - strand, within AMB_RS01600 at 356.176 kb on - strand, within AMB_RS01600 at 356.176 kb on - strand, within AMB_RS01600 at 356.176 kb on - strand, within AMB_RS01600 at 356.492 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.595 kb on + strand at 356.637 kb on + strand at 356.637 kb on + strand at 356.637 kb on + strand at 356.664 kb on + strand at 356.775 kb on + strand, within AMB_RS01605 at 356.775 kb on + strand, within AMB_RS01605 at 357.051 kb on + strand, within AMB_RS01605 at 357.156 kb on + strand, within AMB_RS01605
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 354,773 + +0.6 354,774 - -1.2 354,774 - -0.1 354,788 + -1.0 354,886 + AMB_RS01595 0.12 -1.0 354,886 + AMB_RS01595 0.12 +0.0 354,887 - AMB_RS01595 0.12 -0.1 355,206 - AMB_RS01595 0.52 -0.3 355,253 - AMB_RS01595 0.58 -0.3 355,253 - AMB_RS01595 0.58 +0.3 355,313 + AMB_RS01595 0.65 -2.3 355,313 + AMB_RS01595 0.65 +0.0 355,314 - AMB_RS01595 0.65 +0.1 355,314 - AMB_RS01595 0.65 -1.4 355,574 - -0.6 355,576 - -0.2 355,593 + +1.1 355,713 + -0.5 355,714 - +0.5 355,714 - -0.2 355,714 - -0.6 355,714 - -0.3 355,853 + AMB_RS01600 0.26 -0.6 355,854 - AMB_RS01600 0.26 +0.4 355,854 - AMB_RS01600 0.26 -0.7 355,854 - AMB_RS01600 0.26 -0.7 355,866 + AMB_RS01600 0.28 +0.3 355,867 - AMB_RS01600 0.28 -0.3 355,867 - AMB_RS01600 0.28 +0.2 355,867 - AMB_RS01600 0.28 -0.3 355,867 - AMB_RS01600 0.28 -0.2 355,867 - AMB_RS01600 0.28 -1.0 356,007 - AMB_RS01600 0.46 -1.0 356,175 + AMB_RS01600 0.68 -0.7 356,175 + AMB_RS01600 0.68 -0.9 356,175 + AMB_RS01600 0.68 -0.5 356,175 + AMB_RS01600 0.68 +0.2 356,176 - AMB_RS01600 0.68 -0.3 356,176 - AMB_RS01600 0.68 -0.4 356,176 - AMB_RS01600 0.68 +0.3 356,176 - AMB_RS01600 0.68 +0.4 356,492 + -1.2 356,595 + -0.3 356,595 + -0.2 356,595 + -0.3 356,595 + +0.9 356,595 + -0.3 356,595 + +0.3 356,595 + -1.6 356,595 + -1.3 356,637 + -0.9 356,637 + -0.6 356,637 + -1.7 356,664 + +0.0 356,775 + AMB_RS01605 0.16 -0.7 356,775 + AMB_RS01605 0.16 -0.6 357,051 + AMB_RS01605 0.40 -0.8 357,156 + AMB_RS01605 0.49 -1.2
Or see this region's nucleotide sequence