Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01165

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01160 and AMB_RS01165 are separated by 44 nucleotidesAMB_RS01165 and AMB_RS01170 are separated by 11 nucleotides AMB_RS01160: AMB_RS01160 - glycosyltransferase, at 257,818 to 258,912 _RS01160 AMB_RS01165: AMB_RS01165 - hypothetical protein, at 258,957 to 259,316 _RS01165 AMB_RS01170: AMB_RS01170 - copper export protein, at 259,328 to 260,911 _RS01170 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1at 257.990 kb on + strand, within AMB_RS01160at 258.044 kb on + strand, within AMB_RS01160at 258.044 kb on + strand, within AMB_RS01160at 258.044 kb on + strand, within AMB_RS01160at 258.045 kb on - strand, within AMB_RS01160at 258.194 kb on + strand, within AMB_RS01160at 258.194 kb on + strand, within AMB_RS01160at 258.195 kb on - strand, within AMB_RS01160at 258.276 kb on + strand, within AMB_RS01160at 258.359 kb on + strand, within AMB_RS01160at 258.359 kb on + strand, within AMB_RS01160at 258.359 kb on + strand, within AMB_RS01160at 258.360 kb on - strand, within AMB_RS01160at 258.360 kb on - strand, within AMB_RS01160at 258.435 kb on - strand, within AMB_RS01160at 258.840 kb on + strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.929 kb on + strandat 258.929 kb on + strandat 258.929 kb on + strandat 258.929 kb on + strandat 258.929 kb on + strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.930 kb on - strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.931 kb on + strandat 258.932 kb on - strandat 258.932 kb on - strandat 259.002 kb on - strand, within AMB_RS01165at 259.102 kb on - strand, within AMB_RS01165at 259.102 kb on - strand, within AMB_RS01165at 259.236 kb on + strand, within AMB_RS01165at 259.236 kb on + strand, within AMB_RS01165at 259.236 kb on + strand, within AMB_RS01165at 259.237 kb on - strand, within AMB_RS01165at 259.237 kb on - strand, within AMB_RS01165at 259.237 kb on - strand, within AMB_RS01165at 259.238 kb on + strand, within AMB_RS01165at 259.729 kb on - strand, within AMB_RS01170at 259.790 kb on + strand, within AMB_RS01170at 259.790 kb on + strand, within AMB_RS01170at 259.790 kb on + strand, within AMB_RS01170at 259.793 kb on + strand, within AMB_RS01170at 259.793 kb on + strand, within AMB_RS01170at 259.793 kb on + strand, within AMB_RS01170at 259.793 kb on + strand, within AMB_RS01170at 259.794 kb on - strand, within AMB_RS01170at 259.794 kb on - strand, within AMB_RS01170at 259.982 kb on + strand, within AMB_RS01170at 259.982 kb on + strand, within AMB_RS01170at 259.983 kb on - strand, within AMB_RS01170at 260.019 kb on - strand, within AMB_RS01170

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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257,990 + AMB_RS01160 0.16 -0.6
258,044 + AMB_RS01160 0.21 -0.6
258,044 + AMB_RS01160 0.21 +1.2
258,044 + AMB_RS01160 0.21 -1.1
258,045 - AMB_RS01160 0.21 -0.3
258,194 + AMB_RS01160 0.34 -1.9
258,194 + AMB_RS01160 0.34 -0.9
258,195 - AMB_RS01160 0.34 -0.3
258,276 + AMB_RS01160 0.42 +0.8
258,359 + AMB_RS01160 0.49 -0.7
258,359 + AMB_RS01160 0.49 -1.5
258,359 + AMB_RS01160 0.49 -0.8
258,360 - AMB_RS01160 0.49 +0.9
258,360 - AMB_RS01160 0.49 +0.5
258,435 - AMB_RS01160 0.56 -0.0
258,840 + +0.3
258,841 - +0.2
258,841 - -0.2
258,929 + -0.4
258,929 + +0.0
258,929 + +0.0
258,929 + -0.8
258,929 + -2.1
258,930 - +0.3
258,930 - -1.6
258,930 - -0.4
258,930 - -0.2
258,930 - -0.5
258,930 - +0.2
258,930 - -3.1
258,930 - -0.3
258,931 + +0.6
258,931 + -0.2
258,931 + +0.5
258,931 + -0.2
258,931 + -0.2
258,931 + -1.6
258,931 + -1.2
258,931 + +0.6
258,932 - +0.2
258,932 - +0.4
259,002 - AMB_RS01165 0.12 -0.9
259,102 - AMB_RS01165 0.40 -0.5
259,102 - AMB_RS01165 0.40 -1.5
259,236 + AMB_RS01165 0.78 -0.2
259,236 + AMB_RS01165 0.78 -0.3
259,236 + AMB_RS01165 0.78 +0.1
259,237 - AMB_RS01165 0.78 -1.4
259,237 - AMB_RS01165 0.78 -1.0
259,237 - AMB_RS01165 0.78 -0.2
259,238 + AMB_RS01165 0.78 -1.4
259,729 - AMB_RS01170 0.25 -0.4
259,790 + AMB_RS01170 0.29 +0.0
259,790 + AMB_RS01170 0.29 +0.2
259,790 + AMB_RS01170 0.29 -0.5
259,793 + AMB_RS01170 0.29 -0.1
259,793 + AMB_RS01170 0.29 +0.1
259,793 + AMB_RS01170 0.29 +0.5
259,793 + AMB_RS01170 0.29 -0.4
259,794 - AMB_RS01170 0.29 -0.5
259,794 - AMB_RS01170 0.29 -0.9
259,982 + AMB_RS01170 0.41 +1.1
259,982 + AMB_RS01170 0.41 -0.5
259,983 - AMB_RS01170 0.41 +0.8
260,019 - AMB_RS01170 0.44 +1.6

Or see this region's nucleotide sequence