Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00585

Experiment: 30_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00580 and AMB_RS00585 are separated by 139 nucleotidesAMB_RS00585 and AMB_RS00590 are separated by 27 nucleotidesAMB_RS00590 and AMB_RS00595 are separated by 3 nucleotides AMB_RS00580: AMB_RS00580 - glycosyltransferase, at 132,987 to 134,021 _RS00580 AMB_RS00585: AMB_RS00585 - hypothetical protein, at 134,161 to 134,868 _RS00585 AMB_RS00590: AMB_RS00590 - radical SAM protein, at 134,896 to 135,693 _RS00590 AMB_RS00595: AMB_RS00595 - B12-binding domain-containing radical SAM protein, at 135,697 to 137,157 _RS00595 Position (kb) 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.198 kb on + strand, within AMB_RS00580at 133.369 kb on + strand, within AMB_RS00580at 133.370 kb on - strand, within AMB_RS00580at 133.418 kb on + strand, within AMB_RS00580at 133.419 kb on - strand, within AMB_RS00580at 133.430 kb on + strand, within AMB_RS00580at 133.540 kb on + strand, within AMB_RS00580at 133.542 kb on + strand, within AMB_RS00580at 133.650 kb on + strand, within AMB_RS00580at 133.650 kb on + strand, within AMB_RS00580at 133.650 kb on + strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.665 kb on + strand, within AMB_RS00580at 133.963 kb on - strandat 134.182 kb on + strandat 134.199 kb on + strandat 134.200 kb on - strandat 134.220 kb on + strandat 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.240 kb on - strand, within AMB_RS00585at 134.240 kb on - strand, within AMB_RS00585at 134.295 kb on + strand, within AMB_RS00585at 134.295 kb on + strand, within AMB_RS00585at 134.363 kb on + strand, within AMB_RS00585at 134.497 kb on + strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.599 kb on + strand, within AMB_RS00585at 134.600 kb on - strand, within AMB_RS00585at 134.662 kb on + strand, within AMB_RS00585at 134.662 kb on + strand, within AMB_RS00585at 134.663 kb on - strand, within AMB_RS00585at 134.663 kb on - strand, within AMB_RS00585at 134.708 kb on - strand, within AMB_RS00585at 134.719 kb on + strand, within AMB_RS00585at 134.720 kb on - strand, within AMB_RS00585at 134.725 kb on - strand, within AMB_RS00585at 134.725 kb on - strand, within AMB_RS00585at 134.748 kb on + strand, within AMB_RS00585at 134.767 kb on + strand, within AMB_RS00585at 134.768 kb on - strand, within AMB_RS00585at 134.768 kb on - strand, within AMB_RS00585at 134.769 kb on + strand, within AMB_RS00585at 134.770 kb on - strand, within AMB_RS00585at 134.800 kb on + strandat 134.859 kb on + strandat 134.866 kb on + strandat 134.867 kb on - strandat 134.867 kb on - strandat 134.867 kb on - strandat 135.196 kb on + strand, within AMB_RS00590at 135.196 kb on + strand, within AMB_RS00590at 135.196 kb on + strand, within AMB_RS00590at 135.197 kb on - strand, within AMB_RS00590at 135.197 kb on - strand, within AMB_RS00590at 135.201 kb on + strand, within AMB_RS00590at 135.201 kb on + strand, within AMB_RS00590at 135.202 kb on - strand, within AMB_RS00590at 135.202 kb on - strand, within AMB_RS00590at 135.229 kb on + strand, within AMB_RS00590at 135.230 kb on - strand, within AMB_RS00590at 135.370 kb on - strand, within AMB_RS00590at 135.445 kb on + strand, within AMB_RS00590at 135.445 kb on + strand, within AMB_RS00590at 135.513 kb on + strand, within AMB_RS00590at 135.514 kb on - strand, within AMB_RS00590at 135.577 kb on + strand, within AMB_RS00590at 135.578 kb on - strand, within AMB_RS00590at 135.578 kb on - strand, within AMB_RS00590at 135.612 kb on + strand, within AMB_RS00590at 135.612 kb on + strand, within AMB_RS00590at 135.612 kb on + strand, within AMB_RS00590at 135.613 kb on - strand, within AMB_RS00590at 135.613 kb on - strand, within AMB_RS00590at 135.616 kb on + strandat 135.616 kb on + strandat 135.648 kb on + strandat 135.649 kb on - strandat 135.711 kb on - strandat 135.748 kb on - strandat 135.766 kb on + strandat 135.766 kb on + strandat 135.767 kb on - strandat 135.767 kb on - strandat 135.767 kb on - strandat 135.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_3
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133,198 + AMB_RS00580 0.20 +0.2
133,369 + AMB_RS00580 0.37 +0.1
133,370 - AMB_RS00580 0.37 +0.4
133,418 + AMB_RS00580 0.42 +1.0
133,419 - AMB_RS00580 0.42 -2.1
133,430 + AMB_RS00580 0.43 +1.5
133,540 + AMB_RS00580 0.53 -0.0
133,542 + AMB_RS00580 0.54 -0.3
133,650 + AMB_RS00580 0.64 -0.5
133,650 + AMB_RS00580 0.64 -0.7
133,650 + AMB_RS00580 0.64 -0.5
133,651 - AMB_RS00580 0.64 -0.6
133,651 - AMB_RS00580 0.64 -0.0
133,651 - AMB_RS00580 0.64 +0.2
133,651 - AMB_RS00580 0.64 +1.1
133,665 + AMB_RS00580 0.66 -0.7
133,963 - -0.2
134,182 + +0.5
134,199 + -0.2
134,200 - +1.6
134,220 + -0.5
134,239 + AMB_RS00585 0.11 -0.4
134,239 + AMB_RS00585 0.11 +0.2
134,239 + AMB_RS00585 0.11 +0.7
134,239 + AMB_RS00585 0.11 -0.5
134,240 - AMB_RS00585 0.11 -0.2
134,240 - AMB_RS00585 0.11 -0.2
134,295 + AMB_RS00585 0.19 +0.9
134,295 + AMB_RS00585 0.19 -0.1
134,363 + AMB_RS00585 0.29 -0.4
134,497 + AMB_RS00585 0.47 -0.1
134,498 - AMB_RS00585 0.48 -0.9
134,498 - AMB_RS00585 0.48 -0.6
134,498 - AMB_RS00585 0.48 -1.3
134,498 - AMB_RS00585 0.48 -0.6
134,498 - AMB_RS00585 0.48 -0.5
134,498 - AMB_RS00585 0.48 +0.2
134,498 - AMB_RS00585 0.48 -1.0
134,498 - AMB_RS00585 0.48 -2.1
134,599 + AMB_RS00585 0.62 +0.1
134,600 - AMB_RS00585 0.62 -0.1
134,662 + AMB_RS00585 0.71 -0.6
134,662 + AMB_RS00585 0.71 +0.2
134,663 - AMB_RS00585 0.71 -0.8
134,663 - AMB_RS00585 0.71 -0.7
134,708 - AMB_RS00585 0.77 +0.1
134,719 + AMB_RS00585 0.79 -0.3
134,720 - AMB_RS00585 0.79 -0.3
134,725 - AMB_RS00585 0.80 +0.2
134,725 - AMB_RS00585 0.80 -0.1
134,748 + AMB_RS00585 0.83 -0.3
134,767 + AMB_RS00585 0.86 -0.1
134,768 - AMB_RS00585 0.86 -0.3
134,768 - AMB_RS00585 0.86 -1.3
134,769 + AMB_RS00585 0.86 +1.3
134,770 - AMB_RS00585 0.86 -0.2
134,800 + +0.3
134,859 + -0.5
134,866 + +0.0
134,867 - +0.3
134,867 - -3.0
134,867 - +0.0
135,196 + AMB_RS00590 0.38 +0.7
135,196 + AMB_RS00590 0.38 -0.7
135,196 + AMB_RS00590 0.38 -0.2
135,197 - AMB_RS00590 0.38 -1.1
135,197 - AMB_RS00590 0.38 -0.2
135,201 + AMB_RS00590 0.38 -2.5
135,201 + AMB_RS00590 0.38 -0.2
135,202 - AMB_RS00590 0.38 +0.3
135,202 - AMB_RS00590 0.38 -0.4
135,229 + AMB_RS00590 0.42 +0.1
135,230 - AMB_RS00590 0.42 -0.7
135,370 - AMB_RS00590 0.59 +1.1
135,445 + AMB_RS00590 0.69 +0.1
135,445 + AMB_RS00590 0.69 +0.3
135,513 + AMB_RS00590 0.77 -0.5
135,514 - AMB_RS00590 0.77 +0.3
135,577 + AMB_RS00590 0.85 -0.6
135,578 - AMB_RS00590 0.85 -0.3
135,578 - AMB_RS00590 0.85 -0.8
135,612 + AMB_RS00590 0.90 -0.6
135,612 + AMB_RS00590 0.90 +0.3
135,612 + AMB_RS00590 0.90 -0.6
135,613 - AMB_RS00590 0.90 -0.4
135,613 - AMB_RS00590 0.90 -1.1
135,616 + -0.1
135,616 + +0.1
135,648 + +0.5
135,649 - -0.7
135,711 - -0.1
135,748 - -0.6
135,766 + +0.3
135,766 + +0.3
135,767 - -0.0
135,767 - -0.1
135,767 - +0.2
135,767 - -0.5

Or see this region's nucleotide sequence