Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00435 and AMB_RS00440 are separated by 50 nucleotides AMB_RS00440 and AMB_RS00445 overlap by 1 nucleotides AMB_RS00445 and AMB_RS00450 are separated by 53 nucleotides
AMB_RS00435: AMB_RS00435 - B12-binding domain-containing radical SAM protein, at 94,326 to 96,215
_RS00435
AMB_RS00440: AMB_RS00440 - hypothetical protein, at 96,266 to 98,272
_RS00440
AMB_RS00445: AMB_RS00445 - acylneuraminate cytidylyltransferase family protein, at 98,272 to 98,976
_RS00445
AMB_RS00450: AMB_RS00450 - radical SAM protein, at 99,030 to 100,166
_RS00450
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 95.290 kb on - strand, within AMB_RS00435 at 95.290 kb on - strand, within AMB_RS00435 at 95.523 kb on + strand, within AMB_RS00435 at 95.523 kb on + strand, within AMB_RS00435 at 95.523 kb on + strand, within AMB_RS00435 at 95.524 kb on - strand, within AMB_RS00435 at 95.524 kb on - strand, within AMB_RS00435 at 95.524 kb on - strand, within AMB_RS00435 at 95.524 kb on - strand, within AMB_RS00435 at 95.553 kb on + strand, within AMB_RS00435 at 95.553 kb on + strand, within AMB_RS00435 at 95.554 kb on - strand, within AMB_RS00435 at 95.554 kb on - strand, within AMB_RS00435 at 95.579 kb on + strand, within AMB_RS00435 at 95.579 kb on + strand, within AMB_RS00435 at 95.579 kb on + strand, within AMB_RS00435 at 95.579 kb on + strand, within AMB_RS00435 at 95.580 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.611 kb on - strand, within AMB_RS00435 at 95.727 kb on + strand, within AMB_RS00435 at 95.727 kb on + strand, within AMB_RS00435 at 95.728 kb on - strand, within AMB_RS00435 at 95.728 kb on - strand, within AMB_RS00435 at 95.728 kb on - strand, within AMB_RS00435 at 95.733 kb on + strand, within AMB_RS00435 at 95.733 kb on + strand, within AMB_RS00435 at 95.733 kb on + strand, within AMB_RS00435 at 95.733 kb on + strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.734 kb on - strand, within AMB_RS00435 at 95.761 kb on - strand, within AMB_RS00435 at 95.791 kb on - strand, within AMB_RS00435 at 95.796 kb on - strand, within AMB_RS00435 at 95.856 kb on - strand, within AMB_RS00435 at 95.978 kb on + strand, within AMB_RS00435 at 95.981 kb on - strand, within AMB_RS00435 at 96.126 kb on + strand at 96.128 kb on + strand at 96.128 kb on + strand at 96.128 kb on + strand at 96.128 kb on + strand at 96.128 kb on + strand at 96.129 kb on - strand at 96.129 kb on - strand at 96.129 kb on - strand at 96.129 kb on - strand at 96.140 kb on + strand at 96.141 kb on - strand at 96.213 kb on + strand at 98.243 kb on + strand at 98.965 kb on - strand at 98.965 kb on - strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.087 kb on + strand at 99.088 kb on - strand at 99.088 kb on - strand at 99.088 kb on - strand at 99.237 kb on + strand, within AMB_RS00450 at 99.237 kb on + strand, within AMB_RS00450 at 99.238 kb on - strand, within AMB_RS00450
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 95,290 - AMB_RS00435 0.51 -1.3 95,290 - AMB_RS00435 0.51 -0.5 95,523 + AMB_RS00435 0.63 +1.3 95,523 + AMB_RS00435 0.63 +0.1 95,523 + AMB_RS00435 0.63 -0.6 95,524 - AMB_RS00435 0.63 +0.1 95,524 - AMB_RS00435 0.63 +0.6 95,524 - AMB_RS00435 0.63 +0.3 95,524 - AMB_RS00435 0.63 -1.7 95,553 + AMB_RS00435 0.65 -0.1 95,553 + AMB_RS00435 0.65 -0.1 95,554 - AMB_RS00435 0.65 +0.3 95,554 - AMB_RS00435 0.65 +0.1 95,579 + AMB_RS00435 0.66 -0.3 95,579 + AMB_RS00435 0.66 +0.2 95,579 + AMB_RS00435 0.66 +0.0 95,579 + AMB_RS00435 0.66 -1.1 95,580 - AMB_RS00435 0.66 -0.7 95,611 - AMB_RS00435 0.68 +0.2 95,611 - AMB_RS00435 0.68 -0.1 95,611 - AMB_RS00435 0.68 -0.4 95,611 - AMB_RS00435 0.68 +0.0 95,611 - AMB_RS00435 0.68 -0.7 95,611 - AMB_RS00435 0.68 +1.7 95,611 - AMB_RS00435 0.68 +1.9 95,727 + AMB_RS00435 0.74 +1.1 95,727 + AMB_RS00435 0.74 +0.9 95,728 - AMB_RS00435 0.74 +0.2 95,728 - AMB_RS00435 0.74 +0.1 95,728 - AMB_RS00435 0.74 -0.2 95,733 + AMB_RS00435 0.74 -0.7 95,733 + AMB_RS00435 0.74 -0.2 95,733 + AMB_RS00435 0.74 +0.8 95,733 + AMB_RS00435 0.74 -0.8 95,734 - AMB_RS00435 0.74 +0.6 95,734 - AMB_RS00435 0.74 +0.4 95,734 - AMB_RS00435 0.74 -0.3 95,734 - AMB_RS00435 0.74 -0.6 95,734 - AMB_RS00435 0.74 -0.4 95,734 - AMB_RS00435 0.74 +0.0 95,734 - AMB_RS00435 0.74 +0.0 95,734 - AMB_RS00435 0.74 +0.0 95,761 - AMB_RS00435 0.76 -0.6 95,791 - AMB_RS00435 0.78 -0.3 95,796 - AMB_RS00435 0.78 +1.4 95,856 - AMB_RS00435 0.81 -0.3 95,978 + AMB_RS00435 0.87 -0.3 95,981 - AMB_RS00435 0.88 -1.1 96,126 + +0.5 96,128 + -0.3 96,128 + -0.0 96,128 + +0.3 96,128 + -0.3 96,128 + -0.4 96,129 - -0.4 96,129 - -0.0 96,129 - +0.3 96,129 - -1.1 96,140 + -0.6 96,141 - +0.3 96,213 + -0.7 98,243 + +0.3 98,965 - -0.2 98,965 - -0.1 99,087 + +0.4 99,087 + -0.4 99,087 + -0.7 99,087 + -0.5 99,087 + -0.1 99,088 - +2.9 99,088 - -1.3 99,088 - -2.5 99,237 + AMB_RS00450 0.18 -0.7 99,237 + AMB_RS00450 0.18 +0.0 99,238 - AMB_RS00450 0.18 -1.7
Or see this region's nucleotide sequence