Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26950

Experiment: L-Tryptophan (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Tryptophan (C)
104,985	+		ABIE40_RS26940	0.70	-1.1
105,004	+		ABIE40_RS26940	0.74	+0.5
105,005	-		ABIE40_RS26940	0.74	-0.2
105,005	-		ABIE40_RS26940	0.74	+0.2
105,014	+		ABIE40_RS26940	0.76	+1.2
105,015	-		ABIE40_RS26940	0.77	-0.1
105,270	+				-1.3
105,270	+				-0.5
105,270	+				-0.7
105,274	+				-1.3
105,275	-				+1.3
105,275	-				-0.5
105,275	-				-0.5
105,275	-				+2.3
105,275	-				-1.1
105,275	-				+2.3
105,283	+				+0.1
105,309	-				-0.3
105,364	+		ABIE40_RS26945	0.19	-0.5
105,364	+		ABIE40_RS26945	0.19	-0.2
105,365	-		ABIE40_RS26945	0.19	+1.4
105,365	-		ABIE40_RS26945	0.19	+0.1
105,365	-		ABIE40_RS26945	0.19	-0.3
105,365	-		ABIE40_RS26945	0.19	+1.0
105,412	+		ABIE40_RS26945	0.34	+0.2
105,412	+		ABIE40_RS26945	0.34	-0.3
105,413	-		ABIE40_RS26945	0.35	+0.1
105,419	+		ABIE40_RS26945	0.37	+0.2
105,645	+				+1.3
105,691	+				-0.6
105,691	+				-0.5
105,704	+				+0.8
105,705	-				+1.7
105,745	-				-2.4
105,745	-				+2.4
105,783	+				-2.3
105,784	-				-0.9
105,784	-				-1.8
105,784	-				+0.1
105,871	+				-0.8
105,907	+				-0.4
105,907	+				+1.9
105,907	+				-0.1
105,908	-				+0.3
105,911	+				+0.3
105,911	+				+0.0
105,912	-				-0.2
105,912	-				+0.2
105,912	-				+0.8
105,912	-				-1.9
105,912	-				-2.3
105,912	-				+0.2
106,004	+				+1.0
106,004	+				+0.6
106,004	+				+1.9
106,004	+				-0.1
106,005	-				+0.4
106,041	+				-0.9
106,050	+				-0.6
106,051	-				-0.1
106,102	-		ABIE40_RS26950	0.12	-1.0
106,102	-		ABIE40_RS26950	0.12	-0.3
106,222	+		ABIE40_RS26950	0.17	-1.7
106,237	+		ABIE40_RS26950	0.18	-1.1
106,238	-		ABIE40_RS26950	0.18	-2.0
106,238	-		ABIE40_RS26950	0.18	+0.9
106,272	+		ABIE40_RS26950	0.20	+1.2
106,278	-		ABIE40_RS26950	0.20	-0.3
106,278	-		ABIE40_RS26950	0.20	-0.6
106,278	-		ABIE40_RS26950	0.20	-0.9
106,489	+		ABIE40_RS26950	0.29	+0.6
106,490	-		ABIE40_RS26950	0.29	+0.3
106,532	-		ABIE40_RS26950	0.31	-1.5
106,554	+		ABIE40_RS26950	0.32	-0.5
106,571	-		ABIE40_RS26950	0.33	+2.3
106,571	-		ABIE40_RS26950	0.33	+1.7
106,571	-		ABIE40_RS26950	0.33	+0.6
106,607	+		ABIE40_RS26950	0.35	+0.3
106,608	-		ABIE40_RS26950	0.35	-0.3
106,646	+		ABIE40_RS26950	0.36	+0.7
106,711	-		ABIE40_RS26950	0.39	-1.6
106,852	+		ABIE40_RS26950	0.46	+0.3
106,888	-		ABIE40_RS26950	0.47	+1.7
106,888	-		ABIE40_RS26950	0.47	-0.5
106,888	-		ABIE40_RS26950	0.47	+0.5
106,908	+		ABIE40_RS26950	0.48	-2.6
107,010	+		ABIE40_RS26950	0.53	-0.6
107,011	-		ABIE40_RS26950	0.53	-1.9
107,015	-		ABIE40_RS26950	0.53	-0.5
107,059	+		ABIE40_RS26950	0.55	-0.1
107,228	+		ABIE40_RS26950	0.62	+0.5
107,228	+		ABIE40_RS26950	0.62	-1.2
107,228	+		ABIE40_RS26950	0.62	-0.7
107,250	+		ABIE40_RS26950	0.63	-1.7
107,385	+		ABIE40_RS26950	0.69	-0.1
107,385	+		ABIE40_RS26950	0.69	+0.9
107,385	+		ABIE40_RS26950	0.69	-0.8
107,386	-		ABIE40_RS26950	0.69	+1.6
107,386	-		ABIE40_RS26950	0.69	-0.3
107,386	-		ABIE40_RS26950	0.69	-0.4
107,386	-		ABIE40_RS26950	0.69	-2.7
107,531	+		ABIE40_RS26950	0.76	-1.5
107,532	-		ABIE40_RS26950	0.76	-1.2
107,683	+		ABIE40_RS26950	0.83	-1.7
107,684	-		ABIE40_RS26950	0.83	-1.4
107,684	-		ABIE40_RS26950	0.83	-2.2
107,699	+		ABIE40_RS26950	0.84	+0.0
107,750	+		ABIE40_RS26950	0.86	+0.4
107,750	+		ABIE40_RS26950	0.86	+0.3
107,751	-		ABIE40_RS26950	0.86	+0.2
107,836	+		ABIE40_RS26950	0.90	+0.4
107,836	+		ABIE40_RS26950	0.90	-1.5
107,843	-				-0.1
107,843	-				-1.2
107,933	+				+0.1
107,934	-				-0.9
108,249	-				-0.2
108,340	+				+1.1
108,340	+				+0.3
108,340	+				+0.1
108,341	-				+1.1
108,341	-				-0.6
108,341	-				-0.1
108,341	-				-1.1
108,384	+				-0.2
108,385	-				+0.8
108,385	-				-0.4
108,385	-				-0.7
108,385	-				+1.1
108,385	-				-0.6
108,385	-				+0.9
108,385	-				-0.3
108,438	+				-0.9
108,445	+				-1.4
108,445	+				+1.0
108,445	+				+0.3
108,446	-				-1.6
108,572	+		ABIE40_RS26955	0.17	+0.1
108,573	-		ABIE40_RS26955	0.17	-1.7
108,573	-		ABIE40_RS26955	0.17	+0.9
108,573	-		ABIE40_RS26955	0.17	-0.8
108,573	-		ABIE40_RS26955	0.17	+0.9
108,573	-		ABIE40_RS26955	0.17	-1.7
108,573	-		ABIE40_RS26955	0.17	-0.7
108,575	-		ABIE40_RS26955	0.17	-0.9
108,580	+		ABIE40_RS26955	0.18	-0.4
108,580	+		ABIE40_RS26955	0.18	-0.3
108,581	-		ABIE40_RS26955	0.19	+0.7
108,584	+		ABIE40_RS26955	0.19	-0.7
108,604	+		ABIE40_RS26955	0.23	+0.1
108,604	+		ABIE40_RS26955	0.23	-1.2
108,604	+		ABIE40_RS26955	0.23	-0.3
108,605	-		ABIE40_RS26955	0.23	+0.8
108,658	+		ABIE40_RS26955	0.32	-0.7
108,658	+		ABIE40_RS26955	0.32	-1.0
108,689	+		ABIE40_RS26955	0.38	-1.1
108,727	+		ABIE40_RS26955	0.44	-2.5
108,746	+		ABIE40_RS26955	0.48	+0.3
108,747	-		ABIE40_RS26955	0.48	-0.4
108,760	+		ABIE40_RS26955	0.50	+0.7
108,760	+		ABIE40_RS26955	0.50	-0.1
108,885	+		ABIE40_RS26955	0.72	+0.8
108,885	+		ABIE40_RS26955	0.72	-1.2
108,886	-		ABIE40_RS26955	0.72	-0.4
108,886	-		ABIE40_RS26955	0.72	+0.4
108,920	+		ABIE40_RS26955	0.78	-1.1
108,960	+		ABIE40_RS26955	0.85	+0.3
108,960	+		ABIE40_RS26955	0.85	-0.1
108,960	+		ABIE40_RS26955	0.85	-0.5
108,960	+		ABIE40_RS26955	0.85	-1.8
108,960	+		ABIE40_RS26955	0.85	-0.1
108,960	+		ABIE40_RS26955	0.85	-0.4
108,961	-		ABIE40_RS26955	0.86	-0.1
108,961	-		ABIE40_RS26955	0.86	+0.8
108,961	-		ABIE40_RS26955	0.86	+0.1
108,961	-		ABIE40_RS26955	0.86	-0.6
109,014	+				-0.9
109,014	+				-0.3
109,015	-				-0.4
109,026	+				+1.6
109,026	+				-1.1
109,027	-				+0.7