Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS15980

Experiment: L-Tryptophan (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Tryptophan (C)
3,166,483	+		ABIE40_RS15975	0.12	-1.0
3,166,483	+		ABIE40_RS15975	0.12	-0.9
3,166,484	-		ABIE40_RS15975	0.12	+1.0
3,166,484	-		ABIE40_RS15975	0.12	+0.7
3,166,484	-		ABIE40_RS15975	0.12	+0.2
3,166,485	+		ABIE40_RS15975	0.12	-1.7
3,166,485	+		ABIE40_RS15975	0.12	-0.4
3,166,486	-		ABIE40_RS15975	0.12	+0.2
3,166,653	+		ABIE40_RS15975	0.28	+0.8
3,166,654	-		ABIE40_RS15975	0.28	+0.0
3,166,654	-		ABIE40_RS15975	0.28	-1.1
3,166,654	-		ABIE40_RS15975	0.28	-0.7
3,166,654	-		ABIE40_RS15975	0.28	-0.9
3,166,654	-		ABIE40_RS15975	0.28	+0.0
3,166,654	-		ABIE40_RS15975	0.28	-0.4
3,166,654	-		ABIE40_RS15975	0.28	+0.2
3,166,656	+		ABIE40_RS15975	0.28	+0.7
3,166,656	+		ABIE40_RS15975	0.28	+0.2
3,166,656	+		ABIE40_RS15975	0.28	-0.2
3,166,656	+		ABIE40_RS15975	0.28	+0.7
3,166,656	+		ABIE40_RS15975	0.28	-0.2
3,166,657	-		ABIE40_RS15975	0.28	+0.4
3,166,657	-		ABIE40_RS15975	0.28	-1.3
3,166,832	-		ABIE40_RS15975	0.44	+0.6
3,167,135	-		ABIE40_RS15975	0.72	-2.4
3,167,460	+				+0.5
3,167,460	+				+2.0
3,167,461	-				+1.8
3,167,544	+				-0.7
3,167,545	-		ABIE40_RS15980	0.10	+0.5
3,167,545	-		ABIE40_RS15980	0.10	-0.3
3,167,545	-		ABIE40_RS15980	0.10	+3.6
3,167,545	-		ABIE40_RS15980	0.10	+0.8
3,167,610	+		ABIE40_RS15980	0.18	-1.0
3,167,611	-		ABIE40_RS15980	0.18	+0.2
3,167,611	-		ABIE40_RS15980	0.18	-0.9
3,167,611	-		ABIE40_RS15980	0.18	+1.1
3,167,611	-		ABIE40_RS15980	0.18	+1.0
3,167,611	-		ABIE40_RS15980	0.18	+0.1
3,167,611	-		ABIE40_RS15980	0.18	-0.1
3,167,611	-		ABIE40_RS15980	0.18	-0.7
3,167,661	+		ABIE40_RS15980	0.24	+1.1
3,167,763	+		ABIE40_RS15980	0.36	-0.4
3,167,763	+		ABIE40_RS15980	0.36	-0.0
3,167,763	+		ABIE40_RS15980	0.36	-0.0
3,167,763	+		ABIE40_RS15980	0.36	-0.2
3,167,763	+		ABIE40_RS15980	0.36	-1.2
3,167,763	+		ABIE40_RS15980	0.36	+0.9
3,167,763	+		ABIE40_RS15980	0.36	-0.1
3,167,764	-		ABIE40_RS15980	0.36	+0.9
3,167,764	-		ABIE40_RS15980	0.36	+1.0
3,167,781	+		ABIE40_RS15980	0.38	-0.5
3,167,781	+		ABIE40_RS15980	0.38	+0.2
3,167,782	-		ABIE40_RS15980	0.38	+1.6
3,167,811	+		ABIE40_RS15980	0.41	-0.5
3,167,811	+		ABIE40_RS15980	0.41	+0.1
3,167,811	+		ABIE40_RS15980	0.41	-2.0
3,167,812	-		ABIE40_RS15980	0.41	+1.7
3,167,812	-		ABIE40_RS15980	0.41	-1.0
3,167,812	-		ABIE40_RS15980	0.41	+0.7
3,167,812	-		ABIE40_RS15980	0.41	+0.2
3,167,812	-		ABIE40_RS15980	0.41	-1.0
3,167,812	-		ABIE40_RS15980	0.41	-1.3
3,167,812	-		ABIE40_RS15980	0.41	-0.3
3,167,871	+		ABIE40_RS15980	0.48	+0.2
3,167,923	+		ABIE40_RS15980	0.54	-1.4
3,167,923	+		ABIE40_RS15980	0.54	-0.2
3,167,923	+		ABIE40_RS15980	0.54	-0.6
3,167,923	+		ABIE40_RS15980	0.54	-0.3
3,167,923	+		ABIE40_RS15980	0.54	-0.1
3,167,923	+		ABIE40_RS15980	0.54	-0.6
3,167,923	+		ABIE40_RS15980	0.54	-0.3
3,167,924	-		ABIE40_RS15980	0.54	-1.3
3,167,924	-		ABIE40_RS15980	0.54	+0.3
3,167,924	-		ABIE40_RS15980	0.54	-2.7
3,167,924	-		ABIE40_RS15980	0.54	-0.3
3,167,924	-		ABIE40_RS15980	0.54	+0.1
3,167,925	+		ABIE40_RS15980	0.55	-0.7
3,167,925	+		ABIE40_RS15980	0.55	-0.6
3,167,926	-		ABIE40_RS15980	0.55	-2.4
3,168,016	+		ABIE40_RS15980	0.65	-1.2
3,168,016	+		ABIE40_RS15980	0.65	-0.1
3,168,016	+		ABIE40_RS15980	0.65	+0.6
3,168,016	+		ABIE40_RS15980	0.65	+0.0
3,168,016	+		ABIE40_RS15980	0.65	+0.4
3,168,017	-		ABIE40_RS15980	0.65	-0.3
3,168,017	-		ABIE40_RS15980	0.65	+0.9
3,168,017	-		ABIE40_RS15980	0.65	-1.7
3,168,017	-		ABIE40_RS15980	0.65	-0.5
3,168,017	-		ABIE40_RS15980	0.65	-0.9
3,168,017	-		ABIE40_RS15980	0.65	-0.4
3,168,017	-		ABIE40_RS15980	0.65	+1.7
3,168,018	+		ABIE40_RS15980	0.65	-1.4
3,168,018	+		ABIE40_RS15980	0.65	-1.4
3,168,018	+		ABIE40_RS15980	0.65	-0.6
3,168,018	+		ABIE40_RS15980	0.65	-0.4
3,168,018	+		ABIE40_RS15980	0.65	+1.7
3,168,019	-		ABIE40_RS15980	0.65	-1.0
3,168,019	-		ABIE40_RS15980	0.65	+1.0
3,168,081	+		ABIE40_RS15980	0.73	+0.9
3,168,081	+		ABIE40_RS15980	0.73	+2.0
3,168,082	-		ABIE40_RS15980	0.73	-0.3
3,168,082	-		ABIE40_RS15980	0.73	-0.4
3,168,130	-		ABIE40_RS15980	0.78	-1.6
3,168,225	+		ABIE40_RS15980	0.90	-0.7
3,168,225	+		ABIE40_RS15980	0.90	+1.4
3,168,225	+		ABIE40_RS15980	0.90	+0.4
3,168,226	-		ABIE40_RS15980	0.90	-0.8
3,168,226	-		ABIE40_RS15980	0.90	-0.3
3,168,231	+				-1.0
3,168,231	+				-0.4
3,168,231	+				+3.6
3,168,231	+				-0.8
3,168,232	-				-0.7
3,168,232	-				+0.1
3,168,232	-				-0.5
3,168,307	+				-0.6
3,168,307	+				-0.6
3,168,308	-				-1.1
3,168,308	-				-1.7
3,168,313	+				-0.5
3,168,313	+				+0.5
3,168,313	+				-0.5
3,168,314	-				-0.1
3,168,314	-				-0.2
3,168,342	+				-1.8
3,168,342	+				-0.3
3,168,342	+				+0.5
3,168,444	+		ABIE40_RS15985	0.22	-0.0
3,168,444	+		ABIE40_RS15985	0.22	-1.0
3,168,444	+		ABIE40_RS15985	0.22	+0.4
3,168,444	+		ABIE40_RS15985	0.22	+0.1
3,168,445	-		ABIE40_RS15985	0.22	+0.0
3,168,566	+		ABIE40_RS15985	0.47	-1.0
3,168,567	-		ABIE40_RS15985	0.47	-0.4
3,168,567	-		ABIE40_RS15985	0.47	-0.7
3,168,589	+		ABIE40_RS15985	0.52	+1.0
3,168,590	-		ABIE40_RS15985	0.52	+2.2
3,168,590	-		ABIE40_RS15985	0.52	-0.6
3,168,590	-		ABIE40_RS15985	0.52	+0.4
3,168,685	-		ABIE40_RS15985	0.72	+1.3
3,168,685	-		ABIE40_RS15985	0.72	+0.0
3,168,685	-		ABIE40_RS15985	0.72	+1.4
3,168,720	+		ABIE40_RS15985	0.79	-0.6
3,168,720	+		ABIE40_RS15985	0.79	-2.3
3,168,821	+				+0.1
3,168,821	+				-1.2
3,168,821	+				+0.6
3,168,822	-				-0.3
3,168,822	-				+0.1
3,169,165	-		ABIE40_RS15990	0.28	-1.0