Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06980

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS06970 and ABIE40_RS06975 are separated by 2 nucleotidesABIE40_RS06975 and ABIE40_RS06980 are separated by 230 nucleotidesABIE40_RS06980 and ABIE40_RS06985 are separated by 74 nucleotidesABIE40_RS06985 and ABIE40_RS06990 are separated by 0 nucleotides ABIE40_RS06970: ABIE40_RS06970 - 30S ribosomal protein S9, at 1,363,879 to 1,364,346 _RS06970 ABIE40_RS06975: ABIE40_RS06975 - 50S ribosomal protein L13, at 1,364,349 to 1,364,813 _RS06975 ABIE40_RS06980: ABIE40_RS06980 - PaaI family thioesterase, at 1,365,044 to 1,365,469 _RS06980 ABIE40_RS06985: ABIE40_RS06985 - enoyl-CoA hydratase, at 1,365,544 to 1,366,377 _RS06985 ABIE40_RS06990: ABIE40_RS06990 - EamA family transporter, at 1,366,378 to 1,367,214 _RS06990 Position (kb) 1365 1366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1364.940 kb on - strandat 1364.940 kb on - strandat 1364.940 kb on - strandat 1365.063 kb on + strandat 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.264 kb on + strand, within ABIE40_RS06980at 1365.265 kb on - strand, within ABIE40_RS06980at 1365.265 kb on - strand, within ABIE40_RS06980at 1365.265 kb on - strand, within ABIE40_RS06980at 1365.265 kb on - strand, within ABIE40_RS06980at 1365.265 kb on - strand, within ABIE40_RS06980at 1365.265 kb on - strand, within ABIE40_RS06980at 1365.511 kb on + strandat 1365.512 kb on - strandat 1365.512 kb on - strandat 1365.512 kb on - strandat 1365.537 kb on + strandat 1365.538 kb on - strandat 1365.538 kb on - strandat 1365.723 kb on + strand, within ABIE40_RS06985at 1365.723 kb on + strand, within ABIE40_RS06985at 1365.723 kb on + strand, within ABIE40_RS06985at 1365.723 kb on + strand, within ABIE40_RS06985at 1365.724 kb on - strand, within ABIE40_RS06985at 1365.724 kb on - strand, within ABIE40_RS06985at 1365.724 kb on - strand, within ABIE40_RS06985at 1366.005 kb on + strand, within ABIE40_RS06985at 1366.010 kb on - strand, within ABIE40_RS06985at 1366.153 kb on + strand, within ABIE40_RS06985at 1366.153 kb on + strand, within ABIE40_RS06985at 1366.153 kb on + strand, within ABIE40_RS06985at 1366.154 kb on - strand, within ABIE40_RS06985at 1366.177 kb on + strand, within ABIE40_RS06985at 1366.177 kb on + strand, within ABIE40_RS06985at 1366.178 kb on - strand, within ABIE40_RS06985at 1366.178 kb on - strand, within ABIE40_RS06985at 1366.178 kb on - strand, within ABIE40_RS06985at 1366.178 kb on - strand, within ABIE40_RS06985at 1366.178 kb on - strand, within ABIE40_RS06985at 1366.238 kb on - strand, within ABIE40_RS06985at 1366.270 kb on + strand, within ABIE40_RS06985at 1366.270 kb on + strand, within ABIE40_RS06985at 1366.271 kb on - strand, within ABIE40_RS06985at 1366.271 kb on - strand, within ABIE40_RS06985at 1366.271 kb on - strand, within ABIE40_RS06985at 1366.271 kb on - strand, within ABIE40_RS06985at 1366.271 kb on - strand, within ABIE40_RS06985at 1366.431 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
1,364,940 - -0.9
1,364,940 - -0.9
1,364,940 - +2.1
1,365,063 + -1.0
1,365,264 + ABIE40_RS06980 0.52 -0.2
1,365,264 + ABIE40_RS06980 0.52 +0.3
1,365,264 + ABIE40_RS06980 0.52 -1.0
1,365,264 + ABIE40_RS06980 0.52 -2.5
1,365,264 + ABIE40_RS06980 0.52 +1.2
1,365,264 + ABIE40_RS06980 0.52 -0.7
1,365,264 + ABIE40_RS06980 0.52 -2.0
1,365,264 + ABIE40_RS06980 0.52 -0.8
1,365,264 + ABIE40_RS06980 0.52 -0.7
1,365,265 - ABIE40_RS06980 0.52 +0.1
1,365,265 - ABIE40_RS06980 0.52 +0.3
1,365,265 - ABIE40_RS06980 0.52 -1.7
1,365,265 - ABIE40_RS06980 0.52 +0.1
1,365,265 - ABIE40_RS06980 0.52 -0.1
1,365,265 - ABIE40_RS06980 0.52 -0.1
1,365,511 + +0.0
1,365,512 - -4.0
1,365,512 - -1.2
1,365,512 - -1.7
1,365,537 + -2.2
1,365,538 - -0.5
1,365,538 - +0.3
1,365,723 + ABIE40_RS06985 0.21 -1.1
1,365,723 + ABIE40_RS06985 0.21 -1.6
1,365,723 + ABIE40_RS06985 0.21 -1.2
1,365,723 + ABIE40_RS06985 0.21 -3.1
1,365,724 - ABIE40_RS06985 0.22 +0.9
1,365,724 - ABIE40_RS06985 0.22 -2.8
1,365,724 - ABIE40_RS06985 0.22 +2.7
1,366,005 + ABIE40_RS06985 0.55 -0.2
1,366,010 - ABIE40_RS06985 0.56 -0.7
1,366,153 + ABIE40_RS06985 0.73 -0.7
1,366,153 + ABIE40_RS06985 0.73 -1.0
1,366,153 + ABIE40_RS06985 0.73 -0.5
1,366,154 - ABIE40_RS06985 0.73 +0.1
1,366,177 + ABIE40_RS06985 0.76 -0.8
1,366,177 + ABIE40_RS06985 0.76 +0.7
1,366,178 - ABIE40_RS06985 0.76 +1.9
1,366,178 - ABIE40_RS06985 0.76 -1.0
1,366,178 - ABIE40_RS06985 0.76 -1.7
1,366,178 - ABIE40_RS06985 0.76 -0.4
1,366,178 - ABIE40_RS06985 0.76 -1.1
1,366,238 - ABIE40_RS06985 0.83 +2.0
1,366,270 + ABIE40_RS06985 0.87 -1.1
1,366,270 + ABIE40_RS06985 0.87 -0.1
1,366,271 - ABIE40_RS06985 0.87 +0.7
1,366,271 - ABIE40_RS06985 0.87 -2.2
1,366,271 - ABIE40_RS06985 0.87 -0.5
1,366,271 - ABIE40_RS06985 0.87 -0.4
1,366,271 - ABIE40_RS06985 0.87 -1.4
1,366,431 - -1.1

Or see this region's nucleotide sequence