Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05095 and ABIE40_RS05100 are separated by 1 nucleotides ABIE40_RS05100 and ABIE40_RS05105 are separated by 145 nucleotides ABIE40_RS05105 and ABIE40_RS05110 are separated by 116 nucleotides
ABIE40_RS05095: ABIE40_RS05095 - DMT family transporter, at 994,391 to 995,362
_RS05095
ABIE40_RS05100: ABIE40_RS05100 - VOC family protein, at 995,364 to 995,738
_RS05100
ABIE40_RS05105: ABIE40_RS05105 - class I SAM-dependent methyltransferase, at 995,884 to 996,690
_RS05105
ABIE40_RS05110: ABIE40_RS05110 - EAL domain-containing protein, at 996,807 to 998,399
_RS05110
Position (kb) 995
996
997 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 994.955 kb on + strand, within ABIE40_RS05095 at 994.956 kb on - strand, within ABIE40_RS05095 at 994.957 kb on + strand, within ABIE40_RS05095 at 994.957 kb on + strand, within ABIE40_RS05095 at 994.957 kb on + strand, within ABIE40_RS05095 at 994.957 kb on + strand, within ABIE40_RS05095 at 994.958 kb on - strand, within ABIE40_RS05095 at 994.958 kb on - strand, within ABIE40_RS05095 at 994.958 kb on - strand, within ABIE40_RS05095 at 995.051 kb on + strand, within ABIE40_RS05095 at 995.051 kb on + strand, within ABIE40_RS05095 at 995.051 kb on + strand, within ABIE40_RS05095 at 995.051 kb on + strand, within ABIE40_RS05095 at 995.052 kb on - strand, within ABIE40_RS05095 at 995.118 kb on - strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.147 kb on + strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.148 kb on - strand, within ABIE40_RS05095 at 995.150 kb on + strand, within ABIE40_RS05095 at 995.150 kb on + strand, within ABIE40_RS05095 at 995.150 kb on + strand, within ABIE40_RS05095 at 995.150 kb on + strand, within ABIE40_RS05095 at 995.150 kb on + strand, within ABIE40_RS05095 at 995.151 kb on - strand, within ABIE40_RS05095 at 995.151 kb on - strand, within ABIE40_RS05095 at 995.207 kb on + strand, within ABIE40_RS05095 at 995.207 kb on + strand, within ABIE40_RS05095 at 995.208 kb on - strand, within ABIE40_RS05095 at 995.208 kb on - strand, within ABIE40_RS05095 at 995.208 kb on - strand, within ABIE40_RS05095 at 995.208 kb on - strand, within ABIE40_RS05095 at 995.208 kb on - strand, within ABIE40_RS05095 at 995.208 kb on - strand, within ABIE40_RS05095 at 995.240 kb on + strand, within ABIE40_RS05095 at 995.241 kb on - strand, within ABIE40_RS05095 at 995.270 kb on + strand at 995.270 kb on + strand at 995.270 kb on + strand at 995.271 kb on - strand at 995.271 kb on - strand at 995.361 kb on - strand at 995.361 kb on - strand at 995.617 kb on + strand, within ABIE40_RS05100 at 995.617 kb on + strand, within ABIE40_RS05100 at 995.617 kb on + strand, within ABIE40_RS05100 at 995.617 kb on + strand, within ABIE40_RS05100 at 995.617 kb on + strand, within ABIE40_RS05100 at 995.617 kb on + strand, within ABIE40_RS05100 at 995.617 kb on + strand, within ABIE40_RS05100 at 995.618 kb on - strand, within ABIE40_RS05100 at 995.618 kb on - strand, within ABIE40_RS05100 at 995.618 kb on - strand, within ABIE40_RS05100 at 995.618 kb on - strand, within ABIE40_RS05100 at 995.618 kb on - strand, within ABIE40_RS05100 at 995.683 kb on + strand, within ABIE40_RS05100 at 995.683 kb on + strand, within ABIE40_RS05100 at 995.684 kb on - strand, within ABIE40_RS05100 at 995.684 kb on - strand, within ABIE40_RS05100 at 995.751 kb on + strand at 995.751 kb on + strand at 995.751 kb on + strand at 995.752 kb on - strand at 995.777 kb on - strand at 995.853 kb on + strand at 995.854 kb on - strand at 995.856 kb on + strand at 995.856 kb on + strand at 995.856 kb on + strand at 995.857 kb on - strand at 995.857 kb on - strand at 995.857 kb on - strand at 995.866 kb on + strand at 995.866 kb on + strand at 995.867 kb on - strand at 995.867 kb on - strand at 995.867 kb on - strand at 995.893 kb on + strand at 995.893 kb on + strand at 995.950 kb on + strand at 995.950 kb on + strand at 995.950 kb on + strand at 995.987 kb on + strand, within ABIE40_RS05105 at 996.096 kb on + strand, within ABIE40_RS05105 at 996.512 kb on - strand, within ABIE40_RS05105 at 996.512 kb on - strand, within ABIE40_RS05105 at 996.512 kb on - strand, within ABIE40_RS05105 at 996.751 kb on + strand at 996.751 kb on + strand at 996.751 kb on + strand at 996.763 kb on + strand at 996.835 kb on + strand at 996.835 kb on + strand at 996.835 kb on + strand at 996.835 kb on + strand at 996.835 kb on + strand at 996.836 kb on - strand at 996.836 kb on - strand at 996.836 kb on - strand at 996.838 kb on + strand at 996.838 kb on + strand at 996.839 kb on - strand at 996.869 kb on + strand at 996.870 kb on - strand at 996.870 kb on - strand at 997.076 kb on + strand, within ABIE40_RS05110 at 997.076 kb on + strand, within ABIE40_RS05110 at 997.076 kb on + strand, within ABIE40_RS05110 at 997.076 kb on + strand, within ABIE40_RS05110 at 997.077 kb on - strand, within ABIE40_RS05110 at 997.077 kb on - strand, within ABIE40_RS05110 at 997.077 kb on - strand, within ABIE40_RS05110 at 997.176 kb on + strand, within ABIE40_RS05110 at 997.176 kb on + strand, within ABIE40_RS05110 at 997.176 kb on + strand, within ABIE40_RS05110 at 997.176 kb on + strand, within ABIE40_RS05110 at 997.177 kb on - strand, within ABIE40_RS05110 at 997.500 kb on + strand, within ABIE40_RS05110 at 997.500 kb on + strand, within ABIE40_RS05110 at 997.501 kb on - strand, within ABIE40_RS05110 at 997.501 kb on - strand, within ABIE40_RS05110 at 997.501 kb on - strand, within ABIE40_RS05110 at 997.581 kb on + strand, within ABIE40_RS05110 at 997.581 kb on + strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.657 kb on - strand, within ABIE40_RS05110
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 994,955 + ABIE40_RS05095 0.58 -0.1 994,956 - ABIE40_RS05095 0.58 +0.2 994,957 + ABIE40_RS05095 0.58 -0.7 994,957 + ABIE40_RS05095 0.58 +1.1 994,957 + ABIE40_RS05095 0.58 +1.1 994,957 + ABIE40_RS05095 0.58 +0.2 994,958 - ABIE40_RS05095 0.58 -1.2 994,958 - ABIE40_RS05095 0.58 -0.0 994,958 - ABIE40_RS05095 0.58 -1.7 995,051 + ABIE40_RS05095 0.68 -1.3 995,051 + ABIE40_RS05095 0.68 +0.6 995,051 + ABIE40_RS05095 0.68 -1.2 995,051 + ABIE40_RS05095 0.68 +0.2 995,052 - ABIE40_RS05095 0.68 +0.6 995,118 - ABIE40_RS05095 0.75 +1.1 995,147 + ABIE40_RS05095 0.78 -0.5 995,147 + ABIE40_RS05095 0.78 +0.7 995,147 + ABIE40_RS05095 0.78 +0.6 995,147 + ABIE40_RS05095 0.78 -0.7 995,147 + ABIE40_RS05095 0.78 -0.8 995,147 + ABIE40_RS05095 0.78 -1.2 995,147 + ABIE40_RS05095 0.78 -0.7 995,147 + ABIE40_RS05095 0.78 -1.9 995,147 + ABIE40_RS05095 0.78 -2.3 995,147 + ABIE40_RS05095 0.78 +0.3 995,147 + ABIE40_RS05095 0.78 -0.6 995,147 + ABIE40_RS05095 0.78 -1.9 995,147 + ABIE40_RS05095 0.78 -1.3 995,147 + ABIE40_RS05095 0.78 +0.4 995,147 + ABIE40_RS05095 0.78 +1.1 995,147 + ABIE40_RS05095 0.78 -2.5 995,148 - ABIE40_RS05095 0.78 -3.7 995,148 - ABIE40_RS05095 0.78 -0.5 995,148 - ABIE40_RS05095 0.78 -0.2 995,148 - ABIE40_RS05095 0.78 -0.0 995,148 - ABIE40_RS05095 0.78 -1.9 995,148 - ABIE40_RS05095 0.78 -0.1 995,148 - ABIE40_RS05095 0.78 -2.5 995,148 - ABIE40_RS05095 0.78 +0.2 995,148 - ABIE40_RS05095 0.78 +0.5 995,148 - ABIE40_RS05095 0.78 +0.5 995,150 + ABIE40_RS05095 0.78 -2.2 995,150 + ABIE40_RS05095 0.78 -2.8 995,150 + ABIE40_RS05095 0.78 -0.8 995,150 + ABIE40_RS05095 0.78 -1.4 995,150 + ABIE40_RS05095 0.78 +0.6 995,151 - ABIE40_RS05095 0.78 -0.3 995,151 - ABIE40_RS05095 0.78 -0.2 995,207 + ABIE40_RS05095 0.84 +0.3 995,207 + ABIE40_RS05095 0.84 -0.8 995,208 - ABIE40_RS05095 0.84 -1.1 995,208 - ABIE40_RS05095 0.84 +0.5 995,208 - ABIE40_RS05095 0.84 +0.2 995,208 - ABIE40_RS05095 0.84 -0.0 995,208 - ABIE40_RS05095 0.84 -0.0 995,208 - ABIE40_RS05095 0.84 -0.3 995,240 + ABIE40_RS05095 0.87 +0.5 995,241 - ABIE40_RS05095 0.87 +0.4 995,270 + -0.3 995,270 + -2.1 995,270 + -1.3 995,271 - +1.2 995,271 - -0.0 995,361 - +1.6 995,361 - +0.4 995,617 + ABIE40_RS05100 0.67 -3.0 995,617 + ABIE40_RS05100 0.67 -0.7 995,617 + ABIE40_RS05100 0.67 -0.3 995,617 + ABIE40_RS05100 0.67 +0.5 995,617 + ABIE40_RS05100 0.67 -2.1 995,617 + ABIE40_RS05100 0.67 +0.3 995,617 + ABIE40_RS05100 0.67 -0.4 995,618 - ABIE40_RS05100 0.68 +1.6 995,618 - ABIE40_RS05100 0.68 -0.6 995,618 - ABIE40_RS05100 0.68 -0.5 995,618 - ABIE40_RS05100 0.68 -0.5 995,618 - ABIE40_RS05100 0.68 -0.1 995,683 + ABIE40_RS05100 0.85 +0.5 995,683 + ABIE40_RS05100 0.85 +1.0 995,684 - ABIE40_RS05100 0.85 -0.4 995,684 - ABIE40_RS05100 0.85 -1.4 995,751 + -0.5 995,751 + +0.0 995,751 + -0.1 995,752 - +0.7 995,777 - +1.6 995,853 + +0.8 995,854 - -1.2 995,856 + -1.4 995,856 + +0.4 995,856 + -0.6 995,857 - +0.2 995,857 - +0.9 995,857 - -2.4 995,866 + +0.1 995,866 + -0.9 995,867 - -1.2 995,867 - +0.1 995,867 - +0.3 995,893 + -1.6 995,893 + -0.4 995,950 + -0.5 995,950 + -0.6 995,950 + -0.1 995,987 + ABIE40_RS05105 0.13 -0.1 996,096 + ABIE40_RS05105 0.26 -0.6 996,512 - ABIE40_RS05105 0.78 -1.2 996,512 - ABIE40_RS05105 0.78 -0.8 996,512 - ABIE40_RS05105 0.78 -0.8 996,751 + -0.1 996,751 + +0.1 996,751 + -0.1 996,763 + +1.1 996,835 + -0.4 996,835 + -3.8 996,835 + -0.4 996,835 + -0.1 996,835 + -0.7 996,836 - +0.1 996,836 - -0.2 996,836 - +1.6 996,838 + +0.6 996,838 + +0.4 996,839 - -0.3 996,869 + -0.1 996,870 - -0.4 996,870 - +0.1 997,076 + ABIE40_RS05110 0.17 -1.2 997,076 + ABIE40_RS05110 0.17 -1.2 997,076 + ABIE40_RS05110 0.17 -0.2 997,076 + ABIE40_RS05110 0.17 -0.3 997,077 - ABIE40_RS05110 0.17 -0.4 997,077 - ABIE40_RS05110 0.17 -1.2 997,077 - ABIE40_RS05110 0.17 +2.6 997,176 + ABIE40_RS05110 0.23 -1.1 997,176 + ABIE40_RS05110 0.23 +1.3 997,176 + ABIE40_RS05110 0.23 -0.5 997,176 + ABIE40_RS05110 0.23 -2.6 997,177 - ABIE40_RS05110 0.23 -0.8 997,500 + ABIE40_RS05110 0.44 -0.4 997,500 + ABIE40_RS05110 0.44 +0.2 997,501 - ABIE40_RS05110 0.44 -0.3 997,501 - ABIE40_RS05110 0.44 +0.2 997,501 - ABIE40_RS05110 0.44 +2.4 997,581 + ABIE40_RS05110 0.49 -0.5 997,581 + ABIE40_RS05110 0.49 +1.2 997,582 - ABIE40_RS05110 0.49 -0.3 997,582 - ABIE40_RS05110 0.49 +0.2 997,582 - ABIE40_RS05110 0.49 -1.0 997,582 - ABIE40_RS05110 0.49 -1.7 997,657 - ABIE40_RS05110 0.53 -0.4
Or see this region's nucleotide sequence