Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03100

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03085 and ABIE40_RS03090 are separated by 29 nucleotidesABIE40_RS03090 and ABIE40_RS03095 overlap by 4 nucleotidesABIE40_RS03095 and ABIE40_RS03100 overlap by 10 nucleotidesABIE40_RS03100 and ABIE40_RS03105 are separated by 48 nucleotidesABIE40_RS03105 and ABIE40_RS03110 are separated by 92 nucleotides ABIE40_RS03085: ABIE40_RS03085 - flagellar hook-associated family protein, at 609,608 to 610,732 _RS03085 ABIE40_RS03090: ABIE40_RS03090 - flagellar biosynthesis regulator FlaF, at 610,762 to 611,109 _RS03090 ABIE40_RS03095: ABIE40_RS03095 - flagellar biosynthesis repressor FlbT, at 611,106 to 611,555 _RS03095 ABIE40_RS03100: ABIE40_RS03100 - flagellar hook assembly protein FlgD, at 611,546 to 612,031 _RS03100 ABIE40_RS03105: ABIE40_RS03105 - flagellar biosynthesis protein FliQ, at 612,080 to 612,346 _RS03105 ABIE40_RS03110: ABIE40_RS03110 - flagellar biosynthesis protein FlhA, at 612,439 to 614,526 _RS03110 Position (kb) 611 612 613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 610.682 kb on + strandat 610.682 kb on + strandat 610.683 kb on - strandat 610.743 kb on + strandat 610.747 kb on + strandat 610.747 kb on + strandat 610.748 kb on - strandat 610.748 kb on - strandat 610.765 kb on + strandat 610.765 kb on + strandat 610.766 kb on - strandat 610.766 kb on - strandat 610.777 kb on + strandat 610.882 kb on + strand, within ABIE40_RS03090at 610.912 kb on + strand, within ABIE40_RS03090at 611.059 kb on + strand, within ABIE40_RS03090at 611.059 kb on + strand, within ABIE40_RS03090at 611.059 kb on + strand, within ABIE40_RS03090at 611.060 kb on - strand, within ABIE40_RS03090at 611.060 kb on - strand, within ABIE40_RS03090at 611.079 kb on + strandat 611.079 kb on + strandat 611.103 kb on + strandat 611.103 kb on + strandat 611.103 kb on + strandat 611.103 kb on + strandat 611.104 kb on - strandat 611.104 kb on - strandat 611.104 kb on - strandat 611.104 kb on - strandat 611.277 kb on + strand, within ABIE40_RS03095at 611.277 kb on + strand, within ABIE40_RS03095at 611.387 kb on + strand, within ABIE40_RS03095at 611.466 kb on + strand, within ABIE40_RS03095at 611.630 kb on + strand, within ABIE40_RS03100at 611.630 kb on + strand, within ABIE40_RS03100at 611.630 kb on + strand, within ABIE40_RS03100at 611.630 kb on + strand, within ABIE40_RS03100at 611.631 kb on - strand, within ABIE40_RS03100at 611.635 kb on + strand, within ABIE40_RS03100at 611.635 kb on + strand, within ABIE40_RS03100at 611.692 kb on - strand, within ABIE40_RS03100at 611.692 kb on - strand, within ABIE40_RS03100at 611.758 kb on + strand, within ABIE40_RS03100at 611.759 kb on - strand, within ABIE40_RS03100at 611.759 kb on - strand, within ABIE40_RS03100at 611.759 kb on - strand, within ABIE40_RS03100at 611.810 kb on + strand, within ABIE40_RS03100at 611.810 kb on + strand, within ABIE40_RS03100at 611.810 kb on + strand, within ABIE40_RS03100at 611.810 kb on + strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.811 kb on - strand, within ABIE40_RS03100at 611.822 kb on + strand, within ABIE40_RS03100at 611.822 kb on + strand, within ABIE40_RS03100at 611.822 kb on + strand, within ABIE40_RS03100at 611.822 kb on + strand, within ABIE40_RS03100at 611.822 kb on + strand, within ABIE40_RS03100at 611.822 kb on + strand, within ABIE40_RS03100at 611.823 kb on - strand, within ABIE40_RS03100at 611.823 kb on - strand, within ABIE40_RS03100at 611.823 kb on - strand, within ABIE40_RS03100at 611.877 kb on - strand, within ABIE40_RS03100at 611.914 kb on + strand, within ABIE40_RS03100at 611.999 kb on - strandat 612.029 kb on + strandat 612.029 kb on + strandat 612.029 kb on + strandat 612.029 kb on + strandat 612.030 kb on - strandat 612.030 kb on - strandat 612.030 kb on - strandat 612.030 kb on - strandat 612.030 kb on - strandat 612.030 kb on - strandat 612.066 kb on + strandat 612.079 kb on + strandat 612.080 kb on - strandat 612.373 kb on + strandat 612.373 kb on + strandat 612.373 kb on + strandat 612.373 kb on + strandat 612.373 kb on + strandat 612.374 kb on - strandat 612.374 kb on - strandat 612.390 kb on - strandat 612.438 kb on + strandat 612.439 kb on - strandat 612.458 kb on + strandat 612.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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610,682 + -1.3
610,682 + +0.5
610,683 - +0.0
610,743 + +1.7
610,747 + +1.0
610,747 + -0.1
610,748 - +1.9
610,748 - -0.8
610,765 + -0.6
610,765 + -0.1
610,766 - +0.9
610,766 - -1.8
610,777 + -3.0
610,882 + ABIE40_RS03090 0.34 +1.7
610,912 + ABIE40_RS03090 0.43 -0.4
611,059 + ABIE40_RS03090 0.85 +0.4
611,059 + ABIE40_RS03090 0.85 -0.1
611,059 + ABIE40_RS03090 0.85 +0.3
611,060 - ABIE40_RS03090 0.86 +1.2
611,060 - ABIE40_RS03090 0.86 +0.2
611,079 + -0.1
611,079 + +0.5
611,103 + -2.1
611,103 + +1.1
611,103 + -0.3
611,103 + +0.5
611,104 - -3.1
611,104 - -0.2
611,104 - -0.6
611,104 - +0.7
611,277 + ABIE40_RS03095 0.38 +0.3
611,277 + ABIE40_RS03095 0.38 -2.1
611,387 + ABIE40_RS03095 0.62 +3.3
611,466 + ABIE40_RS03095 0.80 -0.5
611,630 + ABIE40_RS03100 0.17 +2.3
611,630 + ABIE40_RS03100 0.17 -0.7
611,630 + ABIE40_RS03100 0.17 +0.2
611,630 + ABIE40_RS03100 0.17 +2.7
611,631 - ABIE40_RS03100 0.17 +0.6
611,635 + ABIE40_RS03100 0.18 +1.7
611,635 + ABIE40_RS03100 0.18 +2.2
611,692 - ABIE40_RS03100 0.30 +0.1
611,692 - ABIE40_RS03100 0.30 +0.3
611,758 + ABIE40_RS03100 0.44 -0.1
611,759 - ABIE40_RS03100 0.44 +0.0
611,759 - ABIE40_RS03100 0.44 -0.7
611,759 - ABIE40_RS03100 0.44 -1.4
611,810 + ABIE40_RS03100 0.54 +0.0
611,810 + ABIE40_RS03100 0.54 -0.8
611,810 + ABIE40_RS03100 0.54 +2.3
611,810 + ABIE40_RS03100 0.54 -1.5
611,811 - ABIE40_RS03100 0.55 +1.5
611,811 - ABIE40_RS03100 0.55 +1.5
611,811 - ABIE40_RS03100 0.55 -0.9
611,811 - ABIE40_RS03100 0.55 -1.1
611,811 - ABIE40_RS03100 0.55 -0.3
611,811 - ABIE40_RS03100 0.55 +0.1
611,811 - ABIE40_RS03100 0.55 -0.3
611,822 + ABIE40_RS03100 0.57 -1.1
611,822 + ABIE40_RS03100 0.57 +2.2
611,822 + ABIE40_RS03100 0.57 -0.2
611,822 + ABIE40_RS03100 0.57 +2.1
611,822 + ABIE40_RS03100 0.57 +0.7
611,822 + ABIE40_RS03100 0.57 -0.4
611,823 - ABIE40_RS03100 0.57 -0.6
611,823 - ABIE40_RS03100 0.57 -3.0
611,823 - ABIE40_RS03100 0.57 -0.0
611,877 - ABIE40_RS03100 0.68 +0.8
611,914 + ABIE40_RS03100 0.76 +1.7
611,999 - +1.4
612,029 + +1.2
612,029 + -0.0
612,029 + -0.6
612,029 + -0.4
612,030 - +3.7
612,030 - -1.1
612,030 - -0.5
612,030 - +0.6
612,030 - +1.4
612,030 - +2.3
612,066 + +2.4
612,079 + -0.5
612,080 - -0.3
612,373 + +1.0
612,373 + +0.4
612,373 + +0.2
612,373 + -4.5
612,373 + -1.1
612,374 - -0.9
612,374 - +0.9
612,390 - +2.4
612,438 + +0.1
612,439 - +2.9
612,458 + +0.3
612,520 - +0.6

Or see this region's nucleotide sequence