Strain Fitness in Escherichia coli BW25113 around b1783

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmipA and yeaG are separated by 435 nucleotidesyeaG and yeaH are separated by 112 nucleotides b1782: mipA - scaffolding protein for murein synthesizing machinery (NCBI), at 1,863,750 to 1,864,496 mipA b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,864,932 to 1,866,866 yeaG b1784: yeaH - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,866,979 to 1,868,262 yeaH Position (kb) 1864 1865 1866 1867Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1864.037 kb on + strand, within mipAat 1864.155 kb on + strand, within mipAat 1864.155 kb on + strand, within mipAat 1864.158 kb on - strand, within mipAat 1864.158 kb on - strand, within mipAat 1864.234 kb on - strand, within mipAat 1864.234 kb on - strand, within mipAat 1864.352 kb on - strand, within mipAat 1864.398 kb on + strand, within mipAat 1864.398 kb on + strand, within mipAat 1864.659 kb on + strandat 1864.659 kb on + strandat 1864.832 kb on - strandat 1865.039 kb on - strandat 1865.039 kb on - strandat 1865.044 kb on - strandat 1865.184 kb on + strand, within yeaGat 1865.184 kb on + strand, within yeaGat 1865.225 kb on - strand, within yeaGat 1865.500 kb on + strand, within yeaGat 1865.528 kb on - strand, within yeaGat 1865.594 kb on - strand, within yeaGat 1865.788 kb on + strand, within yeaGat 1865.889 kb on + strand, within yeaGat 1866.001 kb on + strand, within yeaGat 1866.009 kb on - strand, within yeaGat 1866.158 kb on + strand, within yeaGat 1866.158 kb on + strand, within yeaGat 1866.313 kb on - strand, within yeaGat 1866.545 kb on - strand, within yeaGat 1866.658 kb on + strand, within yeaGat 1866.698 kb on + strandat 1866.698 kb on + strandat 1866.706 kb on - strandat 1866.877 kb on - strandat 1866.880 kb on + strandat 1866.928 kb on - strandat 1866.928 kb on - strandat 1867.119 kb on - strand, within yeaHat 1867.362 kb on - strand, within yeaHat 1867.362 kb on - strand, within yeaHat 1867.578 kb on + strand, within yeaHat 1867.578 kb on + strand, within yeaHat 1867.694 kb on + strand, within yeaHat 1867.723 kb on + strand, within yeaHat 1867.772 kb on - strand, within yeaHat 1867.803 kb on + strand, within yeaHat 1867.803 kb on + strand, within yeaHat 1867.843 kb on + strand, within yeaH

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,864,037 + mipA b1782 0.38 +0.9
1,864,155 + mipA b1782 0.54 -0.5
1,864,155 + mipA b1782 0.54 +1.0
1,864,158 - mipA b1782 0.55 +1.3
1,864,158 - mipA b1782 0.55 +5.0
1,864,234 - mipA b1782 0.65 +1.0
1,864,234 - mipA b1782 0.65 +0.8
1,864,352 - mipA b1782 0.81 +1.2
1,864,398 + mipA b1782 0.87 +1.0
1,864,398 + mipA b1782 0.87 +0.3
1,864,659 + +0.8
1,864,659 + +0.7
1,864,832 - +4.3
1,865,039 - +4.3
1,865,039 - +3.8
1,865,044 - +4.5
1,865,184 + yeaG b1783 0.13 +4.5
1,865,184 + yeaG b1783 0.13 +5.5
1,865,225 - yeaG b1783 0.15 +4.6
1,865,500 + yeaG b1783 0.29 +4.6
1,865,528 - yeaG b1783 0.31 +4.4
1,865,594 - yeaG b1783 0.34 +3.8
1,865,788 + yeaG b1783 0.44 +4.8
1,865,889 + yeaG b1783 0.49 +4.3
1,866,001 + yeaG b1783 0.55 +3.6
1,866,009 - yeaG b1783 0.56 +4.4
1,866,158 + yeaG b1783 0.63 +3.8
1,866,158 + yeaG b1783 0.63 +3.5
1,866,313 - yeaG b1783 0.71 +4.5
1,866,545 - yeaG b1783 0.83 +4.5
1,866,658 + yeaG b1783 0.89 +3.7
1,866,698 + +5.0
1,866,698 + +4.5
1,866,706 - +5.3
1,866,877 - +3.7
1,866,880 + +0.9
1,866,928 - +3.5
1,866,928 - +3.9
1,867,119 - yeaH b1784 0.11 +4.7
1,867,362 - yeaH b1784 0.30 +3.4
1,867,362 - yeaH b1784 0.30 +3.8
1,867,578 + yeaH b1784 0.47 +3.7
1,867,578 + yeaH b1784 0.47 +4.1
1,867,694 + yeaH b1784 0.56 +4.4
1,867,723 + yeaH b1784 0.58 +4.8
1,867,772 - yeaH b1784 0.62 +4.5
1,867,803 + yeaH b1784 0.64 +3.7
1,867,803 + yeaH b1784 0.64 +3.3
1,867,843 + yeaH b1784 0.67 +4.4

Or see this region's nucleotide sequence