Strain Fitness in Serratia liquefaciens MT49 around IAI46_25035

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25025 and IAI46_25030 are separated by 223 nucleotidesIAI46_25030 and IAI46_25035 are separated by 142 nucleotidesIAI46_25035 and IAI46_25040 are separated by 519 nucleotides IAI46_25025: IAI46_25025 - 23S ribosomal RNA, at 5,340,735 to 5,343,672 _25025 IAI46_25030: IAI46_25030 - tRNA-Glu, at 5,343,896 to 5,343,971 _25030 IAI46_25035: IAI46_25035 - 16S ribosomal RNA, at 5,344,114 to 5,345,658 _25035 IAI46_25040: IAI46_25040 - FadR family transcriptional regulator, at 5,346,178 to 5,346,867 _25040 Position (kb) 5344 5345 5346Strain fitness (log2 ratio) -1 0 1at 5346.120 kb on - strandat 5346.151 kb on + strandat 5346.151 kb on + strandat 5346.152 kb on - strandat 5346.152 kb on - strandat 5346.152 kb on - strandat 5346.186 kb on + strandat 5346.186 kb on + strandat 5346.223 kb on + strandat 5346.223 kb on + strandat 5346.223 kb on + strandat 5346.227 kb on + strandat 5346.227 kb on + strandat 5346.228 kb on - strandat 5346.228 kb on - strandat 5346.268 kb on + strand, within IAI46_25040at 5346.446 kb on + strand, within IAI46_25040at 5346.447 kb on - strand, within IAI46_25040at 5346.447 kb on - strand, within IAI46_25040at 5346.648 kb on + strand, within IAI46_25040

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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5,346,120 - -1.3
5,346,151 + +0.2
5,346,151 + +0.3
5,346,152 - +0.3
5,346,152 - -0.1
5,346,152 - -0.4
5,346,186 + +0.7
5,346,186 + -0.1
5,346,223 + -0.4
5,346,223 + -1.3
5,346,223 + -0.7
5,346,227 + -0.4
5,346,227 + -0.0
5,346,228 - +0.2
5,346,228 - +0.8
5,346,268 + IAI46_25040 0.13 +1.1
5,346,446 + IAI46_25040 0.39 -0.1
5,346,447 - IAI46_25040 0.39 -0.3
5,346,447 - IAI46_25040 0.39 -0.4
5,346,648 + IAI46_25040 0.68 +0.5

Or see this region's nucleotide sequence