Strain Fitness in Serratia liquefaciens MT49 around IAI46_24565

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24560 and IAI46_24565 are separated by 65 nucleotidesIAI46_24565 and IAI46_24570 are separated by 102 nucleotidesIAI46_24570 and IAI46_24575 are separated by 12 nucleotides IAI46_24560: IAI46_24560 - DNA-binding transcriptional regulator CytR, at 5,246,080 to 5,247,108 _24560 IAI46_24565: IAI46_24565 - cell division protein FtsN, at 5,247,174 to 5,248,115 _24565 IAI46_24570: IAI46_24570 - ATP-dependent protease subunit HslV, at 5,248,218 to 5,248,748 _24570 IAI46_24575: IAI46_24575 - HslU--HslV peptidase ATPase subunit, at 5,248,761 to 5,250,095 _24575 Position (kb) 5247 5248 5249Strain fitness (log2 ratio) -2 -1 0 1 2at 5246.231 kb on + strand, within IAI46_24560at 5246.231 kb on + strand, within IAI46_24560at 5246.232 kb on - strand, within IAI46_24560at 5246.237 kb on - strand, within IAI46_24560at 5246.237 kb on - strand, within IAI46_24560at 5246.436 kb on + strand, within IAI46_24560at 5246.571 kb on - strand, within IAI46_24560at 5246.612 kb on - strand, within IAI46_24560at 5246.615 kb on + strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.715 kb on + strand, within IAI46_24560at 5246.724 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.746 kb on - strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.765 kb on - strand, within IAI46_24560at 5246.795 kb on + strand, within IAI46_24560at 5246.836 kb on - strand, within IAI46_24560at 5246.843 kb on + strand, within IAI46_24560at 5246.928 kb on + strand, within IAI46_24560at 5246.941 kb on + strand, within IAI46_24560at 5246.942 kb on - strand, within IAI46_24560at 5247.075 kb on + strandat 5247.075 kb on + strandat 5247.076 kb on - strandat 5247.106 kb on + strandat 5247.129 kb on + strandat 5247.457 kb on + strand, within IAI46_24565at 5247.591 kb on + strand, within IAI46_24565at 5247.591 kb on + strand, within IAI46_24565at 5247.591 kb on + strand, within IAI46_24565at 5247.593 kb on + strand, within IAI46_24565at 5247.593 kb on + strand, within IAI46_24565at 5247.593 kb on + strand, within IAI46_24565at 5247.756 kb on - strand, within IAI46_24565at 5247.804 kb on - strand, within IAI46_24565at 5247.947 kb on - strand, within IAI46_24565at 5247.984 kb on - strand, within IAI46_24565at 5247.984 kb on - strand, within IAI46_24565at 5248.027 kb on - strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.138 kb on + strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.139 kb on - strandat 5248.141 kb on - strandat 5248.141 kb on - strandat 5248.149 kb on + strandat 5248.149 kb on + strandat 5248.158 kb on + strandat 5248.158 kb on + strandat 5248.158 kb on + strandat 5248.159 kb on - strandat 5248.159 kb on - strandat 5248.180 kb on + strandat 5248.181 kb on - strandat 5248.181 kb on - strandat 5248.181 kb on - strandat 5248.181 kb on - strandat 5248.232 kb on - strandat 5248.238 kb on - strandat 5248.238 kb on - strandat 5248.292 kb on + strand, within IAI46_24570at 5248.293 kb on - strand, within IAI46_24570at 5248.297 kb on + strand, within IAI46_24570at 5248.332 kb on + strand, within IAI46_24570at 5248.333 kb on - strand, within IAI46_24570at 5248.335 kb on - strand, within IAI46_24570at 5248.340 kb on + strand, within IAI46_24570at 5248.340 kb on + strand, within IAI46_24570at 5248.340 kb on + strand, within IAI46_24570at 5248.470 kb on - strand, within IAI46_24570at 5248.602 kb on + strand, within IAI46_24570at 5248.668 kb on - strand, within IAI46_24570at 5248.697 kb on + strandat 5248.701 kb on + strandat 5248.701 kb on + strandat 5248.702 kb on - strandat 5248.747 kb on - strandat 5248.747 kb on - strandat 5248.757 kb on + strandat 5248.758 kb on - strandat 5248.758 kb on - strandat 5248.758 kb on - strandat 5248.760 kb on + strandat 5248.760 kb on + strandat 5248.760 kb on + strandat 5248.760 kb on + strandat 5248.760 kb on + strandat 5248.761 kb on - strandat 5248.761 kb on - strandat 5248.761 kb on - strandat 5248.761 kb on - strandat 5248.806 kb on + strandat 5248.806 kb on + strandat 5248.806 kb on + strandat 5248.806 kb on + strandat 5248.807 kb on - strandat 5248.807 kb on - strandat 5249.031 kb on + strand, within IAI46_24575at 5249.031 kb on + strand, within IAI46_24575at 5249.032 kb on - strand, within IAI46_24575

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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5,246,231 + IAI46_24560 0.15 -0.1
5,246,231 + IAI46_24560 0.15 -0.4
5,246,232 - IAI46_24560 0.15 -0.0
5,246,237 - IAI46_24560 0.15 -1.4
5,246,237 - IAI46_24560 0.15 -0.1
5,246,436 + IAI46_24560 0.35 -0.1
5,246,571 - IAI46_24560 0.48 +0.8
5,246,612 - IAI46_24560 0.52 -1.1
5,246,615 + IAI46_24560 0.52 +0.6
5,246,616 - IAI46_24560 0.52 -0.3
5,246,616 - IAI46_24560 0.52 -1.7
5,246,616 - IAI46_24560 0.52 -0.0
5,246,715 + IAI46_24560 0.62 +0.5
5,246,724 + IAI46_24560 0.63 -0.9
5,246,740 + IAI46_24560 0.64 -0.3
5,246,740 + IAI46_24560 0.64 -0.7
5,246,740 + IAI46_24560 0.64 +0.4
5,246,740 + IAI46_24560 0.64 +0.7
5,246,741 - IAI46_24560 0.64 +0.8
5,246,741 - IAI46_24560 0.64 +0.3
5,246,741 - IAI46_24560 0.64 -0.6
5,246,741 - IAI46_24560 0.64 +0.8
5,246,741 - IAI46_24560 0.64 +0.3
5,246,741 - IAI46_24560 0.64 -0.5
5,246,742 + IAI46_24560 0.64 -0.2
5,246,742 + IAI46_24560 0.64 -1.8
5,246,742 + IAI46_24560 0.64 +0.0
5,246,742 + IAI46_24560 0.64 +1.5
5,246,742 + IAI46_24560 0.64 +0.0
5,246,743 - IAI46_24560 0.64 -0.4
5,246,743 - IAI46_24560 0.64 -0.3
5,246,743 - IAI46_24560 0.64 -2.0
5,246,746 - IAI46_24560 0.65 +0.1
5,246,764 + IAI46_24560 0.66 -0.0
5,246,764 + IAI46_24560 0.66 +2.1
5,246,764 + IAI46_24560 0.66 -0.3
5,246,765 - IAI46_24560 0.67 +0.2
5,246,795 + IAI46_24560 0.69 +0.0
5,246,836 - IAI46_24560 0.73 -0.3
5,246,843 + IAI46_24560 0.74 +1.7
5,246,928 + IAI46_24560 0.82 -0.2
5,246,941 + IAI46_24560 0.84 +0.6
5,246,942 - IAI46_24560 0.84 -0.2
5,247,075 + +0.2
5,247,075 + +0.6
5,247,076 - -1.0
5,247,106 + -0.2
5,247,129 + +0.5
5,247,457 + IAI46_24565 0.30 -0.2
5,247,591 + IAI46_24565 0.44 -1.6
5,247,591 + IAI46_24565 0.44 +0.3
5,247,591 + IAI46_24565 0.44 -0.6
5,247,593 + IAI46_24565 0.44 +0.6
5,247,593 + IAI46_24565 0.44 +0.3
5,247,593 + IAI46_24565 0.44 +1.1
5,247,756 - IAI46_24565 0.62 -0.5
5,247,804 - IAI46_24565 0.67 +0.2
5,247,947 - IAI46_24565 0.82 +0.6
5,247,984 - IAI46_24565 0.86 -0.2
5,247,984 - IAI46_24565 0.86 +1.3
5,248,027 - +0.2
5,248,138 + -0.2
5,248,138 + +0.7
5,248,138 + -0.2
5,248,138 + +0.0
5,248,138 + +0.5
5,248,138 + -1.1
5,248,138 + +0.6
5,248,138 + +0.7
5,248,138 + +0.7
5,248,138 + +0.6
5,248,138 + -0.8
5,248,138 + -0.8
5,248,138 + +0.8
5,248,139 - -0.9
5,248,139 - +0.3
5,248,139 - -0.3
5,248,139 - -2.4
5,248,139 - +0.2
5,248,139 - -0.6
5,248,139 - +0.1
5,248,139 - +1.1
5,248,141 - -0.4
5,248,141 - -0.1
5,248,149 + +0.1
5,248,149 + +0.9
5,248,158 + -0.5
5,248,158 + +0.7
5,248,158 + +0.5
5,248,159 - -0.7
5,248,159 - +1.4
5,248,180 + +1.3
5,248,181 - -0.4
5,248,181 - +1.5
5,248,181 - -0.3
5,248,181 - -0.1
5,248,232 - -1.0
5,248,238 - -2.1
5,248,238 - +1.1
5,248,292 + IAI46_24570 0.14 +0.6
5,248,293 - IAI46_24570 0.14 -0.5
5,248,297 + IAI46_24570 0.15 -0.1
5,248,332 + IAI46_24570 0.21 -0.5
5,248,333 - IAI46_24570 0.22 +0.7
5,248,335 - IAI46_24570 0.22 +1.5
5,248,340 + IAI46_24570 0.23 +1.2
5,248,340 + IAI46_24570 0.23 -0.0
5,248,340 + IAI46_24570 0.23 +2.0
5,248,470 - IAI46_24570 0.47 -0.3
5,248,602 + IAI46_24570 0.72 +0.5
5,248,668 - IAI46_24570 0.85 +1.7
5,248,697 + +0.6
5,248,701 + -0.1
5,248,701 + +0.2
5,248,702 - -0.8
5,248,747 - +1.6
5,248,747 - -0.1
5,248,757 + +0.2
5,248,758 - -0.1
5,248,758 - -0.8
5,248,758 - +0.5
5,248,760 + +0.1
5,248,760 + -1.3
5,248,760 + +0.5
5,248,760 + +0.2
5,248,760 + -0.5
5,248,761 - +1.6
5,248,761 - +0.9
5,248,761 - +0.4
5,248,761 - -1.6
5,248,806 + +0.2
5,248,806 + -0.8
5,248,806 + +0.5
5,248,806 + +1.2
5,248,807 - -1.0
5,248,807 - +0.8
5,249,031 + IAI46_24575 0.20 +0.8
5,249,031 + IAI46_24575 0.20 -0.7
5,249,032 - IAI46_24575 0.20 +1.7

Or see this region's nucleotide sequence