Strain Fitness in Serratia liquefaciens MT49 around IAI46_24340

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24330 and IAI46_24335 are separated by 116 nucleotidesIAI46_24335 and IAI46_24340 are separated by 21 nucleotidesIAI46_24340 and IAI46_24345 are separated by 5 nucleotides IAI46_24330: IAI46_24330 - HTH-type transcriptional activator IlvY, at 5,194,185 to 5,195,084 _24330 IAI46_24335: IAI46_24335 - DUF2461 domain-containing protein, at 5,195,201 to 5,195,902 _24335 IAI46_24340: IAI46_24340 - threonine ammonia-lyase, biosynthetic, at 5,195,924 to 5,197,468 _24340 IAI46_24345: IAI46_24345 - dihydroxy-acid dehydratase, at 5,197,474 to 5,199,324 _24345 Position (kb) 5195 5196 5197 5198Strain fitness (log2 ratio) -2 -1 0 1 2at 5194.949 kb on + strand, within IAI46_24330at 5194.950 kb on - strand, within IAI46_24330at 5194.950 kb on - strand, within IAI46_24330at 5194.966 kb on + strand, within IAI46_24330at 5194.973 kb on + strand, within IAI46_24330at 5194.973 kb on + strand, within IAI46_24330at 5194.973 kb on + strand, within IAI46_24330at 5194.974 kb on - strand, within IAI46_24330at 5194.979 kb on + strand, within IAI46_24330at 5195.063 kb on - strandat 5195.063 kb on - strandat 5195.066 kb on - strandat 5195.083 kb on - strandat 5195.102 kb on + strandat 5195.128 kb on + strandat 5195.134 kb on + strandat 5195.135 kb on - strandat 5195.159 kb on + strandat 5195.159 kb on + strandat 5195.160 kb on - strandat 5195.160 kb on - strandat 5195.160 kb on - strandat 5195.198 kb on + strandat 5195.198 kb on + strandat 5195.203 kb on - strandat 5195.203 kb on - strandat 5195.237 kb on + strandat 5195.257 kb on - strandat 5195.316 kb on - strand, within IAI46_24335at 5195.367 kb on + strand, within IAI46_24335at 5195.368 kb on - strand, within IAI46_24335at 5195.415 kb on + strand, within IAI46_24335at 5195.416 kb on - strand, within IAI46_24335at 5195.494 kb on + strand, within IAI46_24335at 5195.532 kb on + strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.533 kb on - strand, within IAI46_24335at 5195.535 kb on + strand, within IAI46_24335at 5195.535 kb on + strand, within IAI46_24335at 5195.547 kb on + strand, within IAI46_24335at 5195.581 kb on - strand, within IAI46_24335at 5195.653 kb on + strand, within IAI46_24335at 5195.654 kb on - strand, within IAI46_24335at 5195.682 kb on - strand, within IAI46_24335at 5195.684 kb on - strand, within IAI46_24335at 5195.684 kb on - strand, within IAI46_24335at 5195.699 kb on - strand, within IAI46_24335at 5195.800 kb on - strand, within IAI46_24335at 5196.076 kb on - strandat 5196.162 kb on + strand, within IAI46_24340at 5196.207 kb on + strand, within IAI46_24340at 5196.207 kb on + strand, within IAI46_24340at 5196.207 kb on + strand, within IAI46_24340at 5196.208 kb on - strand, within IAI46_24340at 5196.208 kb on - strand, within IAI46_24340at 5196.358 kb on - strand, within IAI46_24340at 5196.363 kb on + strand, within IAI46_24340at 5196.363 kb on + strand, within IAI46_24340at 5196.363 kb on + strand, within IAI46_24340at 5196.364 kb on - strand, within IAI46_24340at 5196.364 kb on - strand, within IAI46_24340at 5196.488 kb on + strand, within IAI46_24340at 5196.488 kb on + strand, within IAI46_24340at 5196.488 kb on + strand, within IAI46_24340at 5196.489 kb on - strand, within IAI46_24340at 5196.489 kb on - strand, within IAI46_24340at 5196.492 kb on + strand, within IAI46_24340at 5196.493 kb on - strand, within IAI46_24340at 5196.493 kb on - strand, within IAI46_24340at 5196.493 kb on - strand, within IAI46_24340at 5196.493 kb on - strand, within IAI46_24340at 5196.493 kb on - strand, within IAI46_24340at 5196.493 kb on - strand, within IAI46_24340at 5196.661 kb on + strand, within IAI46_24340at 5196.662 kb on - strand, within IAI46_24340at 5197.085 kb on + strand, within IAI46_24340at 5197.085 kb on + strand, within IAI46_24340at 5197.086 kb on - strand, within IAI46_24340at 5197.086 kb on - strand, within IAI46_24340at 5197.182 kb on + strand, within IAI46_24340at 5197.183 kb on - strand, within IAI46_24340at 5197.269 kb on + strand, within IAI46_24340at 5197.269 kb on + strand, within IAI46_24340at 5197.269 kb on + strand, within IAI46_24340at 5197.270 kb on - strand, within IAI46_24340at 5197.392 kb on + strandat 5197.392 kb on + strandat 5197.393 kb on - strandat 5197.393 kb on - strandat 5197.475 kb on + strandat 5197.501 kb on + strandat 5197.502 kb on - strandat 5197.538 kb on + strandat 5197.539 kb on - strandat 5197.539 kb on - strandat 5197.539 kb on - strandat 5197.539 kb on - strandat 5197.674 kb on + strand, within IAI46_24345at 5197.674 kb on + strand, within IAI46_24345at 5197.674 kb on + strand, within IAI46_24345at 5197.675 kb on - strand, within IAI46_24345at 5197.675 kb on - strand, within IAI46_24345at 5197.832 kb on + strand, within IAI46_24345at 5197.832 kb on + strand, within IAI46_24345at 5197.833 kb on - strand, within IAI46_24345at 5198.016 kb on + strand, within IAI46_24345at 5198.048 kb on + strand, within IAI46_24345at 5198.049 kb on - strand, within IAI46_24345at 5198.049 kb on - strand, within IAI46_24345at 5198.100 kb on + strand, within IAI46_24345at 5198.101 kb on - strand, within IAI46_24345at 5198.167 kb on - strand, within IAI46_24345at 5198.235 kb on - strand, within IAI46_24345at 5198.269 kb on + strand, within IAI46_24345at 5198.269 kb on + strand, within IAI46_24345at 5198.270 kb on - strand, within IAI46_24345at 5198.358 kb on + strand, within IAI46_24345at 5198.358 kb on + strand, within IAI46_24345at 5198.363 kb on + strand, within IAI46_24345at 5198.363 kb on + strand, within IAI46_24345at 5198.363 kb on + strand, within IAI46_24345at 5198.364 kb on - strand, within IAI46_24345at 5198.388 kb on + strand, within IAI46_24345at 5198.388 kb on + strand, within IAI46_24345at 5198.389 kb on - strand, within IAI46_24345at 5198.389 kb on - strand, within IAI46_24345

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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5,194,949 + IAI46_24330 0.85 +0.3
5,194,950 - IAI46_24330 0.85 -1.1
5,194,950 - IAI46_24330 0.85 +0.7
5,194,966 + IAI46_24330 0.87 -0.0
5,194,973 + IAI46_24330 0.88 -0.9
5,194,973 + IAI46_24330 0.88 -0.3
5,194,973 + IAI46_24330 0.88 -0.4
5,194,974 - IAI46_24330 0.88 +0.8
5,194,979 + IAI46_24330 0.88 -0.2
5,195,063 - -0.1
5,195,063 - -0.3
5,195,066 - -1.5
5,195,083 - +0.8
5,195,102 + +0.8
5,195,128 + -0.5
5,195,134 + -0.8
5,195,135 - +1.2
5,195,159 + +0.4
5,195,159 + -0.4
5,195,160 - -0.2
5,195,160 - +0.3
5,195,160 - +1.1
5,195,198 + +0.6
5,195,198 + +0.3
5,195,203 - -0.2
5,195,203 - -0.3
5,195,237 + -0.1
5,195,257 - +0.6
5,195,316 - IAI46_24335 0.16 -0.1
5,195,367 + IAI46_24335 0.24 -1.0
5,195,368 - IAI46_24335 0.24 +0.3
5,195,415 + IAI46_24335 0.30 +1.2
5,195,416 - IAI46_24335 0.31 +0.0
5,195,494 + IAI46_24335 0.42 -2.4
5,195,532 + IAI46_24335 0.47 +0.0
5,195,533 - IAI46_24335 0.47 +0.6
5,195,533 - IAI46_24335 0.47 -0.7
5,195,533 - IAI46_24335 0.47 +0.9
5,195,533 - IAI46_24335 0.47 +0.7
5,195,533 - IAI46_24335 0.47 +1.3
5,195,533 - IAI46_24335 0.47 -0.7
5,195,533 - IAI46_24335 0.47 +0.0
5,195,535 + IAI46_24335 0.48 +0.3
5,195,535 + IAI46_24335 0.48 +0.4
5,195,547 + IAI46_24335 0.49 -0.1
5,195,581 - IAI46_24335 0.54 -0.4
5,195,653 + IAI46_24335 0.64 +0.0
5,195,654 - IAI46_24335 0.65 -0.2
5,195,682 - IAI46_24335 0.69 -1.3
5,195,684 - IAI46_24335 0.69 -0.0
5,195,684 - IAI46_24335 0.69 +0.0
5,195,699 - IAI46_24335 0.71 +0.6
5,195,800 - IAI46_24335 0.85 -1.3
5,196,076 - +0.1
5,196,162 + IAI46_24340 0.15 +1.2
5,196,207 + IAI46_24340 0.18 +0.1
5,196,207 + IAI46_24340 0.18 +0.5
5,196,207 + IAI46_24340 0.18 +0.3
5,196,208 - IAI46_24340 0.18 +1.1
5,196,208 - IAI46_24340 0.18 -0.4
5,196,358 - IAI46_24340 0.28 +1.5
5,196,363 + IAI46_24340 0.28 -0.4
5,196,363 + IAI46_24340 0.28 -0.7
5,196,363 + IAI46_24340 0.28 -0.4
5,196,364 - IAI46_24340 0.28 -0.0
5,196,364 - IAI46_24340 0.28 +0.3
5,196,488 + IAI46_24340 0.37 -0.8
5,196,488 + IAI46_24340 0.37 +1.7
5,196,488 + IAI46_24340 0.37 -1.1
5,196,489 - IAI46_24340 0.37 +1.0
5,196,489 - IAI46_24340 0.37 +0.2
5,196,492 + IAI46_24340 0.37 -0.4
5,196,493 - IAI46_24340 0.37 -0.2
5,196,493 - IAI46_24340 0.37 -0.3
5,196,493 - IAI46_24340 0.37 -0.8
5,196,493 - IAI46_24340 0.37 +0.2
5,196,493 - IAI46_24340 0.37 +0.6
5,196,493 - IAI46_24340 0.37 +0.3
5,196,661 + IAI46_24340 0.48 +0.5
5,196,662 - IAI46_24340 0.48 -0.6
5,197,085 + IAI46_24340 0.75 -1.2
5,197,085 + IAI46_24340 0.75 -0.6
5,197,086 - IAI46_24340 0.75 +0.2
5,197,086 - IAI46_24340 0.75 +0.0
5,197,182 + IAI46_24340 0.81 -0.0
5,197,183 - IAI46_24340 0.81 +1.0
5,197,269 + IAI46_24340 0.87 +0.8
5,197,269 + IAI46_24340 0.87 +0.7
5,197,269 + IAI46_24340 0.87 -0.5
5,197,270 - IAI46_24340 0.87 +0.2
5,197,392 + +0.8
5,197,392 + -0.7
5,197,393 - -0.1
5,197,393 - +0.5
5,197,475 + -0.0
5,197,501 + -0.2
5,197,502 - -1.1
5,197,538 + -0.3
5,197,539 - +0.1
5,197,539 - +1.0
5,197,539 - +0.5
5,197,539 - -1.1
5,197,674 + IAI46_24345 0.11 +0.4
5,197,674 + IAI46_24345 0.11 -0.3
5,197,674 + IAI46_24345 0.11 +1.0
5,197,675 - IAI46_24345 0.11 +1.2
5,197,675 - IAI46_24345 0.11 +0.1
5,197,832 + IAI46_24345 0.19 +1.4
5,197,832 + IAI46_24345 0.19 +1.0
5,197,833 - IAI46_24345 0.19 -0.9
5,198,016 + IAI46_24345 0.29 +1.0
5,198,048 + IAI46_24345 0.31 +1.5
5,198,049 - IAI46_24345 0.31 +0.2
5,198,049 - IAI46_24345 0.31 -0.8
5,198,100 + IAI46_24345 0.34 -1.9
5,198,101 - IAI46_24345 0.34 -0.6
5,198,167 - IAI46_24345 0.37 +0.2
5,198,235 - IAI46_24345 0.41 +0.5
5,198,269 + IAI46_24345 0.43 +0.2
5,198,269 + IAI46_24345 0.43 +0.6
5,198,270 - IAI46_24345 0.43 +0.9
5,198,358 + IAI46_24345 0.48 -0.0
5,198,358 + IAI46_24345 0.48 -0.1
5,198,363 + IAI46_24345 0.48 -0.6
5,198,363 + IAI46_24345 0.48 +2.5
5,198,363 + IAI46_24345 0.48 +0.3
5,198,364 - IAI46_24345 0.48 +0.1
5,198,388 + IAI46_24345 0.49 +0.8
5,198,388 + IAI46_24345 0.49 -0.4
5,198,389 - IAI46_24345 0.49 -0.9
5,198,389 - IAI46_24345 0.49 +0.4

Or see this region's nucleotide sequence